Published February 24, 2025
| Version v1
Journal article
Open
Phylogeny and phenotype of Filobasidium revealing three new species (Filobasidiaceae, Filobasidiales) from China
Authors/Creators
- 1. Nanyang Normal University, Nanyang, China
Description
The genus Filobasidium, a member of the family Filobasidiaceae in the order Filobasidiales, is a group of basidiomycetes with many representative species. To date, 14 species have been described and accepted in Filobasidium. Although some newfound species from China have recently been published, the species diversity of Filobasidium remains incompletely understood. Samples from various areas of China were obtained and examined to investigate the species diversity of the genus. Three new species, namely F. pseudomali sp. nov., F. castaneae sp. nov., and F. qingyuanense sp. nov., were introduced based on phylogenetic analyses of the internal transcribed spacer (ITS) region and the D1/D2 domain of the large subunit (LSU) rRNA gene and the ITS sequence alone coupled with phenotypic characteristics. Full descriptions, illustrations, comparisons with similar species, and phylogenetic analyses are provided. Findings from this study substantially enrich the biodiversity of Filobasidium in China.
Files
MC_article_142438.pdf
Files
(1.1 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:8bc47df374de8bfcc15a38b95f605500
|
1.1 MB | Preview Download |
System files
(201.1 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:2fc136b5aabbaae3418f3f273417e274
|
201.1 kB | Download |
Linked records
Additional details
References
- Aboutalebian S, Mahmoudi S, Okhovat A, Khodavaisy S, Mirhendi H (2020) Otomycosis Due to the Rare Fungi Talaromyces purpurogenus, Naganishia albida and Filobasidium magnum. Mycopathologia 185(3): 569–575. https://doi.org/10.1007/s11046-020-00439-8
- Andrew R (2016) FigTree: Tree figure drawing tool Version 1.4.3. Institute of Evolutionary Biology, University of Edinburgh Press.
- Bandoni RJ, Oberwinkler F, Bandoni AA (1991) On species of Filobasidium associated with yuccas. Systematic and Applied Microbiology 14(1): 98–101. https://doi.org/10.1016/S0723-2020(11)80368-1
- Baptista M, Sevivas N, Ferreira NV, Fardilha L, Varanda P, Mateus C (2020) Cryptococcus magnus periprosthetic shoulder infection: A case report. JBJS Case Connector 10(4): e20.00507. https://doi.org/10.2106/JBJS.CC.20.00507
- do Carmo-Sousa L, Phaff HJ (1962) An improved method for the detection of spore discharge in the Sporobolomycetaceae. Journal of Bacteriology 83(2): 434–435. https://doi.org/10.1128/jb.83.2.434-435.1962
- Fang Y, Wang Z, Shi Y, Liu F, Wang J, Yang T, Xin Y, Gu Z, Zhang L (2023) Efficient biotransformation of sclareol to sclareolide by Filobasidium magnum JD1025. Applied Biochemistry and Biotechnology 195(2): 1184–1196. https://doi.org/10.1007/s12010-022-04225-8
- Fell JW, Boekhout T, Fonseca A, Scorzetti G, Statzell-Tallman A (2000) Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis. International Journal of Systematic and Evolutionary Microbiology 50(Pt 3): 1351–1371. https://doi.org/10.1099/00207713-50-3-1351
- Fonseca A, Scorzetti G, Fell JW (2000) Diversity in the yeast Cryptococcus albidus and related species as revealed by ribosomal DNA sequence analysis. Canadian Journal of Microbiology 46(1): 7–27. https://doi.org/10.1139/cjm-46-1-7
- Fonseca A, Boekhout T, Fell JW (2011) Cryptococcus Vuillemin (1901). In: Kurtzman CP, Fell JW, Boekhout T (Eds) The Yeasts – a Taxonomic Study, 5th edn, vol. 3. Amsterdam, Elsevier, 1661–1737. https://doi.org/10.1016/B978-0-444-52149-1.00138-5
- Golubev WI, Sampaio JP, Golubeva EW (2006) Cryptococcus stepposus, a new filobasidiaceous yeast species found in the Prioksko-terrasny biosphere reserve in Russia. Mycological Research 110(Pt 8): 957–961. https://doi.org/10.1016/j.mycres.2006.04.006
- Hall TA (1999) Bioedit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.
- Hong SG, Lee KH, Bae KS (2002) Diversity of yeasts associated with natural environments in Korea. Journal of Microbiology (Seoul, Korea) 40: 55–62.
- Kalyaanamoorthy S, Minh BQ, Wong TKF, Von Haeseler A, Jermiin LS (2017) Modelfinder: Fast model selection for accurate phylogenetic estimates. Nature Methods 14(6): 587–589. https://doi.org/10.1038/nmeth.4285
- Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution 30(4): 772–780. https://doi.org/10.1093/molbev/mst010
- Kemler M, Witfeld F, Begerow D, Yurkov A (2017) Phylloplane Yeasts in Temperate Climates. In: Buzzini P, Lachance MA, Yurkov A (Eds) Yeasts in Natural Ecosystems: Diversity. Springer, Cham, 171–197. https://doi.org/10.1007/978-3-319-62683-3-6
- Kumar S, Stecher G, Tamura K (2016) MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution 33(7): 1870–1874. https://doi.org/10.1093/molbev/msw054
- Kurtzman CP, Robnett CJ (1998) Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 73(4): 331–371. https://doi.org/10.1023/A:1001761008817
- Kurtzman CP, Robnett CJ (2003) Phylogenetic relationships among yeasts of the 'Saccharomyces complex' determined from multigene sequence analyses. FEMS Yeast Research 3(4): 417–432. https://doi.org/10.1016/S1567-1356(03)00012-6
- Kurtzman CP, Fell JW, Boekhout T (2011) Methods for isolation, phenotypic characterization and maintenance of yeasts. In: Kurtzman CP, Fell JW, Boekhout T (Eds) The Yeasts – a Taxonomic Study, 5th edn, vol. 1. Amsterdam, Elsevier, 87–110. https://doi.org/10.1016/B978-0-444-52149-1.00007-0
- Kwon-Chung KJ (1977) Perfect state of Cryptococcus uniguttulatus. International Journal of Systematic Bacteriology 27(3): 293–299. https://doi.org/10.1099/00207713-27-3-293
- Kwon-Chung KJ (2011) Filobasidium Olive (1968). In: Kurtzman CP, Fell JW, Boekhout T (Eds) The Yeasts – a Taxonomic Study, 5th edn, vol. 3. Amsterdam, Elsevier, 1457–1465. https://doi.org/10.1016/B978-0-444-52149-1.00115-4
- Laitila A, Wilhelmson A, Kotaviita E, Olkku J, Home S, Juvonen R (2006) Yeasts in an industrial malting ecosystem. Journal of Industrial Microbiology & Biotechnology 33(11): 953–966. https://doi.org/10.1007/s10295-006-0150-z
- Li AH, Yuan FX, Groenewald M, Bensch K, Yurkov AM, Li K, Han PJ, Guo LD, Aime MC, Sampaio JP, Jindamorakot S, Turchetti B, Inacio J, Fungsin B, Wang QM, Bai FY (2020) Diversity and phylogeny of basidiomycetous yeasts from plant leaves and soil: Proposal of two new orders, three new families, eight new genera and one hundred and seven new species. Studies in Mycology 96: 17–140. https://doi.org/10.1016/j.simyco.2020.01.002
- Liu XZ, Wang QM, Theelen B, Groenewald M, Bai FY, Boekhout T (2015a) Phylogeny of tremellomycetous yeasts and related dimorphic and filamentous basidiomycetes reconstructed from multiple gene sequence analyses. Studies in Mycology 81(1): 1–26. https://doi.org/10.1016/j.simyco.2015.08.001
- Liu XZ, Wang QM, Göker M, Groenewald M, Kachalkin AV, Lumbsch HT, Millanes AM, Wedin M, Yurkov AM, Boekhout T, Bai FY (2015b) Towards an integrated phylogenetic classification of the Tremellomycetes. Studies in Mycology 81(1): 85–147. https://doi.org/10.1016/j.simyco.2015.12.001
- Liu XZ, Groenewald M, Boekhout T, Bai FY (2018) Kondoa gutianensis f.a. sp. nov., a novel ballistoconidium-forming yeast species isolated from plant leaves. Antonie van Leeuwenhoek 111(1): 155–160. https://doi.org/10.1007/s10482-017-0936-1
- Luo B, Sun H, Zhang Y, Gu Y, Yan W, Zhang R, Ni Y (2019) Habitat-specificity and diversity of culturable cold-adapted yeasts of a cold-based glacier in the Tianshan Mountains, northwestern China. Applied Microbiology and Biotechnology 103(5): 2311–2327. https://doi.org/10.1007/s00253-018-9512-5
- McNeill J, Barrie FR, Buck WR, Demoulin V, Greuter W, Hawksworth DL, Herendeen PS, Knapp S, Marhold K, Prado J, Prud'homme van Reine WF, Smith GF, Wiersma JH, Turland N (2012) International Code of Nomenclature for algae, fungi, and plants (Melbourne Code). Regnum Vegetabile 154. [A.R.G. Gantner Verlag KG, Ruggell, Liechtenstein. http://www.iapt-taxon.org/nomen/main.php]
- Nakase T, Takashima M (1993) A simple procedure for the high frequency isolation of new taxa of ballistosporous yeasts living on the surfaces of plants. RIKEN Review 3: 33–34.
- Olive LS (1968) An unusual Heterobasidiomycete with Tilletia-like basidia. Journal of the Elisha Mitchell Scientific Society 84: 261–266.
- Rodrigues de Miranda L (1972) Filobasidium caps'uligenum nov. comb. Antonie van Leeuwenhoek 38(1): 91–99. https://doi.org/10.1007/BF02328080
- Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes3.2: Efficient Bayesian phylogenetic inference and model choice, across a large model space. Systematic Biology 61(3): 539–542. https://doi.org/10.1093/sysbio/sys029
- Sayed SM, El-Shehawi AM, Elarnaouty SA, Al-Otaibi SA, El-Shazly SS, Alotaibi SS, Ibrahim R, Ahmed MM, Elseehy MM (2021) Molecular characterization of endophytic fungal communities associated with Vitis vinifera L. at Taif region of Saudi Arabia. Journal of Environmental Biology 42(2): 177–185. https://doi.org/10.22438/jeb/42/2/MRN-1577
- Scorzetti G, Fell JW, Fonseca A, Statzell-Tallman A (2002) Systematics of basidiomycetous yeasts: A comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions. FEMS Yeast Research 2(4): 495–517. https://doi.org/10.1016/S1567-1356(02)00128-9
- Stamatakis A (2014) RAxML Version 8: A tool for phylogenetic analyses and post analyses of large phylogenies. Bioinformatics (Oxford, England) 30(9): 1312–1313. https://doi.org/10.1093/bioinformatics/btu033
- Su S, Zhao D, Yuan B, Ma Y, Zhu S, Xu K, Lee G, Ho CT, Huang Q (2022) Biosynthesis of 6- and 7-mono-demethylated nobiletins by a newly isolated strain of yeast. Journal of Agricultural and Food Chemistry 70(49): 15439–15448. https://doi.org/10.1021/acs.jafc.2c03822
- Toome M, Roberson RW, Aime MC (2013) Meredithblackwellia eburnean gen. et sp. nov., Kriegeriaceae fam. nov. and Kriegeriales ord. nov. toward resolving higher-level classification in Microbotryomycetes. Mycologia 105(2): 486–495. https://doi.org/10.3852/12-251
- Vishniac HS (2006) A multivariate analysis of soil yeasts isolated from a latitudinal gradient. Microbial Ecology 52(1): 90–103. https://doi.org/10.1007/s00248-006-9066-4
- Vu D, Groenewald M, Szöke S, Cardinali G, Eberhardt U, Stielow B, de Vries M, Verkleij GJ, Crous PW, Boekhout T, Robert V (2016) DNA barcoding analysis of more than 9 000 yeast isolates contributes to quantitative thresholds for yeast species and genera delimitation. Studies in Mycology 85(1): 91–105. https://doi.org/10.1016/j.simyco.2016.11.007
- Wang QM, Theelen B, Groenewald M, Bai FY, Boekhout T (2014) Moniliellomycetes and Malasseziomycetes, two new classes in Ustilaginomycotina. Persoonia 33(1): 41–47. https://doi.org/10.3767/003158514X682313
- Wei XY, Zhu HY, Song L, Zhang RP, Li AH, Niu QH, Liu XZ, Bai FY (2022) Yeast diversity in the Qaidam Basin Desert in China with the description of five new yeast species. Journal of Fungi (Basel, Switzerland) 8(8): 858. https://doi.org/10.3390/jof8080858
- White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (Eds) PCR Protocols: A Guide to Methods and Applications. Academic Press, 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Yurkov A (2017) Yeasts in Forest Soils. In: Buzzini P, Lachance MA, Yurkov A (Eds) Yeasts in Natural Ecosystems: Diversity. Springer, Cham, 87–116. https://doi.org/10.1007/978-3-319-62683-3_3
- Yurkov AM (2018) Yeasts of the soil – obscure but precious. Yeast (Chichester, England) 35(5): 369–378. https://doi.org/10.1002/yea.3310