GenBank Accession Numbers of Associations among MHC genes, latitude, and avian malaria infections in the rufous-collared sparrow (Zonotrichia capensis)
- Rivero de Aguilar, Juan1, 2, 3
- Barroso, Omar1
- Bonaccoroso4, 5
- Cadena, Hector5
- Hussing, Lucas2
- Jorquera, Josefina6
- Martinez, Javier7
- Martínez-de la Puente, Josué8, 9
- Marzal, Alfonso10, 11
- León Miranda, Fabiola6
- Merino, Santiago12
- Matta, Nubia E.13
- Ramenofsky, Marilyn14
- Rozzi, Ricardo1
- Valeris-Chacín, Carlos E.1, 2
- Vásquez, Rodrigo A.1, 2, 3
- Vianna, Juliana A.6, 15
- Wingfield, John C.14
- 1. Centro Subantártico Cabo de Hornos (CHIC), Universidad de Magallanes, Puerto Williams, Chile
- 2. Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Santiago, Chile
- 3. Instituto de Ecología y Biodiversidad, Facultad de Ciencias, Universidad de Chile, Santiago, Chile
- 4. Laboratorio de Biología Evolutiva, and Instituto Biósfera, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, Quito, Ecuador
- 5. Centro de la Biodiversidad y Cambio Climático, Universidad Tecnológica Indoamérica, Quito, Ecuador
- 6. Departamento de Ecología, Instituto Para el Desarrollo Sustentable, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile
- 7. Departamento de Biomedicina y Biotecnología (Area de Parasitología), Universidad de Alcalá de Henares, Madrid, Spain
- 8. Departamento de Parasitología, Universidad de Granada, Granada, Spain
- 9. Ciber de Epidemiología y Salud Pública (CIBERESP), Madrid, Spain
- 10. Departamento de Anatomía, Biología Celular y Zoología, Facultad de Biología, Universidad de Extremadura, Badajoz, Spain
- 11. Grupo de Investigaciones en Fauna Silvestre, Universidad Nacional de San Martín, Tarapoto, Peru
- 12. Departamento de Ecología Evolutiva, Museo Nacional de Ciencias Naturales CSIC, Madrid, Spain
- 13. Departamento de Biología, Facultad de Ciencias, Universidad Nacional de Colombia, Bogotá, Colombia
- 14. Department of Neurobiology, Physiology and Behavior, University of California, Davis, California, USA
- 15. Millennium Institute Center for Genome Regulation (CRG), Millennium Institute of Biodiversity of Antarctic and Subantarctic Ecosystems (BASE), Millennium Nucleus of Patagonian Limit of Life (LiLi), Santiago, Chile
Description
This dataset contains GenBank accession numbers for 21 MHC class I and 104 MHC class II antigen genes obtained from Zonotrichia capensis.
Abstract
The major histocompatibility complex (MHC) is a genetic region in jawed vertebrates that contains key genes involved in the immune response. Associations between the MHC and avian malaria infections in wild birds have been observed and mainly explored in the Northern Hemisphere, while a general lack of information remains in the Southern Hemisphere. Here, we investigated the associations between the MHC genes and infections with Plasmodium and Haemoproteus blood parasites along a latitudinal gradient in South America. We sampled 93 rufous-collared sparrows (Zonotrichia capensis) individuals from four countries, Colombia, Ecuador, Peru, and Chile, and estimated MHC-I and MHC-II allele diversity. We detected between 1–4 (MHC-I) and 1–6 (MHC-II) amino acidic alleles per individual, with signs of positive selection. We obtained generalized additive mixed models to explore the associations between MHC-I and MHC-II diversity and latitude. We also explored the relationship between infection status and latitude/biome. We found a non-linear association between the MHC-II amino acidic allele diversity and latitude. Individuals from north Chile presented a lower MHC genetic diversity than those from other locations. We also found an association between deserts and xeric shrublands and a lower prevalence of Haemoproteus parasites. Our results support a lower MHC genetic in arid or semi-arid habitats in the region with the lower prevalence of Haemoproteus parasites.
Files
accession_number_mhc.csv
Additional details
Related works
- Is part of
- Journal article: 10.1002/ece3.11634 (DOI)
- Is supplement to
- Dataset: 10.5281/zenodo.11398506 (DOI)
Funding
- Fondo Nacional de Desarrollo Científico y Tecnológico
- FONDECYT-CONICYT Postdoctorado 3170211
- Agencia Nacional de Investigación y Desarrollo
- CONICYT PIA APOYO CCTE AFB170008
- Institute of Ecology and Biodiversity
- IEB-FB 210006
- Agencia Nacional de Investigación y Desarrollo
- Convocatoria Nacional Subvención a la Instalación en la Academia, 2020 PAI77200078
- Agencia Nacional de Investigación y Desarrollo
- Cape Horn International Center (CHIC), ANID/BASAL FB210018
- Agencia Nacional de Investigación y Desarrollo
- CGR FB210018
- Millennium Science Initiative
- Millennium Institute of Biodiversity of Antarctic and Subantarctic Ecosystems (BASE) ICN2021_002
- Millennium Science Initiative
- LiLi NCN2021-050
- Universidad San Francisco de Quito
- HUBI 12424
- Agencia Estatal de Investigación
- PID2020-118205GB-I00
- European Commission
- ERDF A way of making Europe PID2020-118205GB-I00
- Federación Española de Enfermedades Raras
- Extremadura 2021–2027 Operational Program of the Recovery, Transformation and Resilience Plan
- European Commission
- European Regional Development Fund, a Way to Make Europe IB20089