Published July 17, 2024 | Version v1

GenBank Accession Numbers of Associations among MHC genes, latitude, and avian malaria infections in the rufous-collared sparrow (Zonotrichia capensis)

Description

This dataset contains GenBank accession numbers for 21 MHC class I and 104 MHC class II antigen genes obtained from Zonotrichia capensis.

Abstract

The major histocompatibility complex (MHC) is a genetic region in jawed vertebrates that contains key genes involved in the immune response. Associations between the MHC and avian malaria infections in wild birds have been observed and mainly explored in the Northern Hemisphere, while a general lack of information remains in the Southern Hemisphere. Here, we investigated the associations between the MHC genes and infections with Plasmodium and Haemoproteus blood parasites along a latitudinal gradient in South America. We sampled 93 rufous-collared sparrows (Zonotrichia capensis) individuals from four countries, Colombia, Ecuador, Peru, and Chile, and estimated MHC-I and MHC-II allele diversity. We detected between 1–4 (MHC-I) and 1–6 (MHC-II) amino acidic alleles per individual, with signs of positive selection. We obtained generalized additive mixed models to explore the associations between MHC-I and MHC-II diversity and latitude. We also explored the relationship between infection status and latitude/biome. We found a non-linear association between the MHC-II amino acidic allele diversity and latitude. Individuals from north Chile presented a lower MHC genetic diversity than those from other locations. We also found an association between deserts and xeric shrublands and a lower prevalence of Haemoproteus parasites. Our results support a lower MHC genetic in arid or semi-arid habitats in the region with the lower prevalence of Haemoproteus parasites.

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Additional details

Related works

Is part of
Journal article: 10.1002/ece3.11634 (DOI)
Is supplement to
Dataset: 10.5281/zenodo.11398506 (DOI)

Funding

Fondo Nacional de Desarrollo Científico y Tecnológico
FONDECYT-CONICYT Postdoctorado 3170211
Agencia Nacional de Investigación y Desarrollo
CONICYT PIA APOYO CCTE AFB170008
Institute of Ecology and Biodiversity
IEB-FB 210006
Agencia Nacional de Investigación y Desarrollo
Convocatoria Nacional Subvención a la Instalación en la Academia, 2020 PAI77200078
Agencia Nacional de Investigación y Desarrollo
Cape Horn International Center (CHIC), ANID/BASAL FB210018
Agencia Nacional de Investigación y Desarrollo
CGR FB210018
Millennium Science Initiative
Millennium Institute of Biodiversity of Antarctic and Subantarctic Ecosystems (BASE) ICN2021_002
Millennium Science Initiative
LiLi NCN2021-050
Universidad San Francisco de Quito
HUBI 12424
Agencia Estatal de Investigación
PID2020-118205GB-I00
European Commission
ERDF A way of making Europe PID2020-118205GB-I00
Federación Española de Enfermedades Raras
Extremadura 2021–2027 Operational Program of the Recovery, Transformation and Resilience Plan
European Commission
European Regional Development Fund, a Way to Make Europe IB20089