Published February 12, 2025 | Version v1
Dataset Restricted

Images and masks of 2D fluorescent microglia

Authors/Creators

  • 1. ROR icon CNRS Ingénierie
  • 2. ROR icon Université de Montpellier

Description

This data set contains 28 pairs (image + mask) of annotated images representing 2D fluorescent microglia. These images are squares of 512x512 pixels, coming from acquisitions in 2048x2048 pixels.

This data was used to train a UNet2D model.

  • inputs.zip: Contains TIFF images on 32-bits. They were normalized in the range of 0.0 to 1.0 from the min and max found in the original image.
  • masks.zip: Contains TIFF images representing the binary masks (8-bits; 0-255) of the microglia present in "inputs.zip".

The file names in both folders match exactly, there is no prefix/suffix.

Microscope ZEISS Axio Imager 2
Objective 20x (Air)
Acquisition mode Widefield
Fluorophore eGFP
Pixel size 0.325 µm
Dimensions 2D, single channel

Files

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Additional details

Software

Repository URL
https://github.com/MontpellierRessourcesImagerie/microglia-analyzer
Programming language
Python
Development Status
Active