Published November 13, 2018
| Version v2
Dataset
Open
Intrachromosomal Hi-C contact lists and matrices of lymphoma cell lines
Creators
- 1. Swiss Institute for Experimental Cancer Research (ISREC), School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
- 2. Department of Computational Biology, University of Lausanne (UNIL), 1011 Lausanne, Switzerland; Swiss Institute of Bioinformatics
- 3. Swiss Institute for Experimental Cancer Research (ISREC), School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland; Department of Computational Biology, University of Lausanne (UNIL), 1011 Lausanne, Switzerland; Swiss Institute of Bioinformatics
- 4. Institute of Physics, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
- 5. Department of Computational Biology, University of Lausanne (UNIL), 1011 Lausanne, Switzerland
Description
Hi-C datasets generated in Donaldson, Sungalee, Zufferey, Tavernari et al. are provided as intrachromosomal contact lists and matrices, divided by cell line/condition and chromosome.
The following lymphoma cell lines/conditions are available:
- Karpas-422 (KARPAS_DMSO and KARPAS_GSK treatment)
- WSU-DLCL2 (WSU_DMSO and WSU_GSK treatment)
- OCI-Ly19 (LY19WT_DMSO)
- OCI-Ly19 expressing the mutated protein EZH2Y646F (LY19Y646F_DMSO)
Contact lists are provided as compressed plain-text files in which each row represents a Hi-C contact. Column fields are described below:
1) strand of read 1 (0=forward, 16=reverse)
2) chromosome of read 1
3) position on the chromosome where read 1 aligned
4) strand of read 2 (0=forward, 16=reverse)
5) chromosome of read 2
6) position on the chromosome where read 2 aligned
7) mapping quality of read 1
8) name of the read pair as seen in the FASTQ files
9) mapping quality of read 2
Intrachromosomal Hi-C matrices are provided in .hic format for visualization with JuiceBox software.
Files
Files
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md5:c565863957b5629b614453de3c9d187f
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30.3 MB | Download |
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md5:76c83e989d2c26c7237dee308128edf9
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62.8 MB | Download |
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md5:f738542cf521e491ce0df5fd9a5538c8
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41.5 MB | Download |
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md5:b9208a85b1d512e3cd01fe84ebc8e8f7
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159.3 MB | Download |
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md5:59e5c7ce8c732e9db483a693221ec95c
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179.0 MB | Download |
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md5:4e3b00a579a12c2d0519bdde9406d83d
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61.4 MB | Download |
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md5:b04007352c1e25f66010c65a1e823742
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36.2 MB | Download |
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md5:88d2998fa044e253abbc9fa6b149a856
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43.4 MB | Download |
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md5:cea39272b6c0d1832bd308db947489d8
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15.7 MB | Download |
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md5:3eb38b58f3aa7954bdd05ca526320bb0
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47.6 MB | Download |
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md5:1271c3234aa48d00d371a9596f6f0e14
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24.9 MB | Download |
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md5:034da157b9889db14239ddc0ddee419f
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157.9 MB | Download |
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md5:88c3bff76b4b409e28a094e7bb8d2234
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118.3 MB | Download |
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md5:dbd43da70f72574cd8345e156f071058
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128.8 MB | Download |
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md5:91bfcffd07b978e02a170ee21c31d918
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95.1 MB | Download |
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md5:71f84e43a1b95e2ecb7573f383964370
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117.0 MB | Download |
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md5:b4de2d40ed9745faae94c3496b1ce6a5
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75.0 MB | Download |
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md5:23cf74a7ec039f754dc4e96e9523fb57
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118.2 MB | Download |
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md5:6a5928f51e3cf397e9ceabc333034e85
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79.9 MB | Download |
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md5:b2f7adfa7dd8a805c0b62540f67cd06a
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114.9 MB | Download |
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md5:e53b1c3780e1ab58024d8a9e5b463e84
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79.8 MB | Download |
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md5:8ed6806411e170587d857d57389b3894
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114.6 MB | Download |
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md5:11eabc4cae5cf2744a19fa680318361d
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89.8 MB | Download |
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md5:8165ec8658a745297f111c456a21bf72
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110.3 MB | Download |
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md5:80729b3705180156848c30ca502fedbf
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91.0 MB | Download |
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md5:ef54fc0ccfd69cb12475c14ae1b06b7c
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89.3 MB | Download |
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md5:4cf402ecdd17d521778eaf4e9bf10858
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57.7 MB | Download |
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md5:5a136aad7222bbd7b634f3644c1e3457
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87.7 MB | Download |
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md5:12e9248c0704c7ebad0efd3416f09a29
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52.3 MB | Download |
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md5:2aaa12a8aebc5b1c3e978cf30e6f4e17
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86.4 MB | Download |
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md5:1c9039ee7376a39eb95b6ef45402c8b8
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53.2 MB | Download |
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md5:ac60ef33ace76b21083ec5ce9cb66743
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87.2 MB | Download |
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md5:3e6921a25df32121a51cc73dd37767e8
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52.8 MB | Download |
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md5:8d8129e9c50475af9353b6b44f7578b5
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65.8 MB | Download |
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md5:7930d0e654dd70c4297ae916cbdf7206
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30.2 MB | Download |
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md5:c5fe7e79dd8ab58de44013c3ff06d7cd
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65.9 MB | Download |
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md5:537c086548a17ad518d224ccc3bc150c
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34.9 MB | Download |
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md5:c81779742ba0f1f944a8981dfc984e9e
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65.0 MB | Download |
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md5:eb7ca20411edf7c053a1173de7c42248
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34.3 MB | Download |
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md5:f6e6585541d4be887499e92c399f3fb7
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67.1 MB | Download |
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md5:5f046433df9f5697106b43adc87eef0c
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41.9 MB | Download |
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md5:473c31f3f2baa2e95160312a5d9ee6ca
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68.7 MB | Download |
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md5:100b0741720972c5196fa5743cc7a73a
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47.4 MB | Download |
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md5:a0be26cb7cc007d5a5095f6e1e69ed56
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56.6 MB | Download |
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md5:48a92f27c90b09ddb74b78506a77e63b
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22.8 MB | Download |
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md5:c724dbd37600daadc71c0fc147aefaf7
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60.2 MB | Download |
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md5:9144eb2bb0b6ec4380dc65c6e5ffcdbd
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39.4 MB | Download |
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md5:e9fd40d88f2c20e60b982ed983cb5095
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139.9 MB | Download |
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md5:e9736eb71a584ce660e0569be2db2282
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102.6 MB | Download |
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md5:e84351a1e450a1e97a9ebc8ae75717a6
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55.5 MB | Download |
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md5:58b32b72641f7152c8c3d0f55ad4fee9
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29.4 MB | Download |
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md5:6347b7c3723e8c246ae533536e5a18c8
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41.5 MB | Download |
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md5:cde6d7328271c617b512389f3df41866
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12.6 MB | Download |
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md5:eba78bfd10d95420b6b3dd0ea3f93558
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46.0 MB | Download |
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md5:9a0365c984031ac12328dadc9e7eb55c
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23.2 MB | Download |
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md5:e7f7ad19ea3017309a39dfb9c418c159
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137.6 MB | Download |
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md5:6e3622de245bf6a31c6f9f097368247b
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90.6 MB | Download |
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md5:7d330eeafc92742fc930cc76a44ee9b7
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112.8 MB | Download |
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md5:e2b5df7dbe1517a3c37d013b736a00ad
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71.0 MB | Download |
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md5:4cbf6e51d6f18b8a2fa56e2069da9d93
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102.8 MB | Download |
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md5:e588b5dc2f9f37fa2bf790b044e458d5
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54.0 MB | Download |
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md5:7c2093874224d1b7f2ff81fb2c8cd028
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103.8 MB | Download |
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md5:819ecbb65be27192afbc9bee0f21a900
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59.6 MB | Download |
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md5:80f176f774bde9d96b6ef719d34b8084
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101.2 MB | Download |
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md5:e4fe8d5e6eb1ff0d304b3f68b26d2128
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60.1 MB | Download |
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md5:0045010319889963b1a4c4c003334fe8
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101.6 MB | Download |
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md5:98843e6be2d55c8b27b2650bc6d2c2c0
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71.1 MB | Download |
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md5:534eaa08b7fa669f23de4dacbfeaacbe
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94.2 MB | Download |
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md5:6ff07f6583b12cf015aec17b7deb57f0
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68.1 MB | Download |
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md5:1dc171c7801efcb1c71937acf38f80fb
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81.3 MB | Download |
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md5:9a4aa3df6ff04e10127957fcd9f43aa6
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47.2 MB | Download |