Benchmarking the impact of reference genome selection on taxonomic profiling accuracy

This repository contains files for all accession ids (including for selections themselves), as well as simulated reads for all of the experiments we ran.

For code to reproduce our results please check our Github: https://github.com/JaspervB-tud/reference_set_selection_benchmark

For the manuscript, see: https://doi.org/10.1101/2025.02.07.637076