Oryctolagus cuniculus DATASET
Contributors
Data curator (4):
- 1. University of Bologna
Description
This dataset consists of genotyping files in the format of PED and MAP file, one of the most common formats that can be easily managed by tools like PLINK, GCTA and several packages for data analysis.
Methods
The genotyping has been carried with Affymetrix Axiom OrcunSNP Array (⁓100K).
PED files are structured as a m×n matrix where m corresponds to the number of analysed animals and n includes 6 columns with information about the animal and the number of analysed SNPs multiplied by 2. The file is a plain text.
MAP files, both for 70K and 60K are structured as a m×4 matrix where m is the number of analysed SNP and the 4 columns represent, respectively, the Chromosome (or Scaffold), the SNP identifier, information related to centimorgan if available, bp position. The assembly used for the mapping is OryCun2.0 (GCA_000003625.1) . The file is a plain text.
Notes
The MAP files are available without any restriction.
The PED files are co-property of Italian National Association of Rabbit Breeders (ANCI), several private breeders and University of Bologna (Prof. Luca Fontanesi), and can be shared for non-commercial purposes, after signing a non-disclosure agreement.
Files
Files
(3.8 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:b03d15a3a8e6de0023a3d80dd7977d54
|
22.6 kB | Download |
|
md5:e2f3c4878493f604aa3062349acda18b
|
3.8 MB | Download |
Additional details
Related works
- Is described by
- Publication: 10.1186/s12711-022-00696-9 (DOI)
- Publication: 10.1111/age.13036 (DOI)
References
- Genomic diversity and signatures of selection in meat and fancy rabbit breeds based on high-density marker data
- A genome-wide association study for the number of teats in European rabbits (Oryctolagus cuniculus) identifies several candidate genes affecting this trait