Published October 17, 2018
| Version 1.0.0
Dataset
Open
LD Estimated from 1k Genomes CEU Population
Description
These data contain estimated pairwise r^2 for variants with allele frequency greater than 0.05 in the 1000 Genomes CEU population. They were estimated using LDshrink (https://github.com/stephenslab/LDshrink). R^2 is only reported when the estimate is greater than 0.1.
For each chromosome there are two files:
chr<chr>_AF0.5_0.1.RDS is an R object containing a data frame with three columns: rowsnp, colsnp, and r2
chr<chr>_AF0.5_snpdata.RDS is an R object containing a data frame with information for every SNP meeting the allele frequency cutoff.
Files
Files
(11.6 GB)
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