Published December 24, 2024
| Version v1
Dataset
Open
Input data to reproduce scripts and figures for TARDIS publication
Authors/Creators
-
Vangeenderhuysen, Pablo
(Researcher)1
-
Vynck, Matthijs
(Researcher)1
- Pomian, Beata (Researcher)1
-
De Windt, Kimberly
(Researcher)1, 2
-
Callemeyn, Emile
(Researcher)1
-
De Paepe, Ellen
(Researcher)1
-
De Commer, Lindsey
(Researcher)3
-
Falony, Gwen
(Researcher)4, 5
- Raes, Jeroen (Researcher)3, 5
-
Nawrot, Tim
(Researcher)6, 7
- et al. Show all 13 authors
Authors/Creators
-
Vangeenderhuysen, Pablo
(Researcher)1
-
Vynck, Matthijs
(Researcher)1
- Pomian, Beata (Researcher)1
-
De Windt, Kimberly
(Researcher)1, 2
-
Callemeyn, Emile
(Researcher)1
-
De Paepe, Ellen
(Researcher)1
-
De Commer, Lindsey
(Researcher)3
-
Falony, Gwen
(Researcher)4, 5
- Raes, Jeroen (Researcher)3, 5
-
Nawrot, Tim
(Researcher)6, 7
-
Rainer, Johannes
(Researcher)8
-
Hemeryck, Lieselot
(Researcher)1
-
Vanhaecke, Lynn
(Supervisor)9, 1
-
1.
Ghent University
-
2.
Ghent University Hospital
-
3.
Katholieke Universiteit Leuven
- 4. KU Leuven
-
5.
VIB-KU Leuven Center for Microbiology
-
6.
Hasselt University
- 7. Leuven University
- 8. Eurac Research
-
9.
Queen's University Belfast
Description
Input data for the code at https://github.com/UGent-LIMET/tardis_publication_code for all data analysis and figures for planned publication in Vangeenderhuysen et al. 2025.
Input data is stored as a .rar file with following folder structure:
.
|-- compare_to_xcalibur/
| `-- all inputs for script R/compare_to_xcalibur.qmd
|-- quality_analysis/
| `-- all inputs for script R/quality_metrics_FAME.qmd and peak_classifier.ipynb
|-- scale_analysis/
| `-- all inputs for script R/scale.R
`-- targeted_results/
|-- ENVIRONAGE
|-- FAME
`-- FGFP
Files
Files
(5.7 GB)
| Name | Size | |
|---|---|---|
|
md5:38ddb2822551b1d281b57d610eb56986
|
5.7 GB | Download |
Additional details
Software
- Repository URL
- https://github.com/UGent-LIMET/tardis_publication_code/tree/main
- Programming language
- R , Python