Published September 14, 2018 | Version v3
Dataset Open

Development of Radix balthica embryos under contrasting temperatures for the duration of their development

Authors/Creators

  • 1. University of Plymouth

Description

Sample datasets, HR modelling data and video acquired using the EmbryoPhenomics platform. Experiment assessing influence of three (20, 25 and 30C) contrasting temperatures on the development of the aquatic gastropod Radix balthica. Imaging was performed from first cell division to hatching and the EmbryoCV package was used to produce phenome-level data. Datasets and associated video for an individual embryo from each temperature are provided.

EmbryoPhenomics datasets can be accessed using the XArray library in Python (or if EmbryoCV is installed see www.embryocv.org for instructions on loading data):

  • results = xr.open_mfdataset(path_to_file). This will reveal the various data arrays.

EmbryoPhenomics HR data can be loaded using the Numpy library in Python:

  • hr = np.load(path_to_file)[()]
    filt = hr[embryoLabel i.e. B3, C5 or D6]

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