Host-level biodiversity shapes the dynamics and networks within the coral reef microbiome

This is the repository associated with the manuscript Host-level biodiversity shapes the dynamics and networks within the coral reef microbiome. It contains all data files used for figures presented in the manuscript. The code to reproduce the files can be found on GitHub.

Files

raw_host-associated_1.asvs.tsv --> ASV table, host-associated samples
raw_host-associated_2.asvs.tsv --> ASV table, host-associated samples
raw_free-living_1.asvs.tsv     --> ASV table, Sterivex samples
raw_free-living_2.asvs.tsv     --> ASV table, Sterivex samples
metadata_host-associated.csv   --> metadata, host-associated samples
metadata_free-living.csv       --> ASV table, Sterivex samples
asv_dat_taxinfo.tsv            --> taxonomy annotated using SILVA v138.1
asv_bctab.tsv                  --> square-root transformed Bray-Curtis dissimilarities 
asv_richtab.tsv                --> Hill number diversity indices
asv_shared.tsv                 --> number of shared ASVs
pathway_list_cat.csv           --> KEGG pathway list with hand-annotated categories
KEGG_path_to_ko.tsv            --> KEGG file mapping pathways to KOs