Life history traits impact the nuclear rate of substitution but not the mitochondrial rate in isopods.
Authors/Creators
- 1. Univ Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5023, ENTPE, Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés, F-69622 Villeurbanne, France
- 2. Univ Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622 Villeurbanne, France
Description
Alignements from the paper "Life history traits impact the nuclear rate of substitution but not the mitochondrial rate in isopods" submitted to Molecular Biology and Evolution.
File "concatenation_382NuclearGenes.fas" corresponds to the concatenation of 382 nuclear genes for 26 Isopod species. File "concatenation_12MtGenes.fas" corresponds to the concatenation of 12 mitochondrial protein coding genes (cytb, cox1, cox2, cox3, atp6, nad1, nad2, nad3, nad4, nad4l, nad5, nad6 ). Genes were aligned with PRANK (Löytynoja and Goldman, 2008) and sites ambiguously aligned were removed with Gblocks (Castresana, 2000).
File "Opsine1_cds.fas" corresponds to the alignement of the coding part of the Opsin 1 gene for 26 Isopod species. Intron has been removed as well as non-sens mutations.
Files
Files
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