Dataset In-vivo probabilistic atlas of human thalamic nuclei based on diffusion weighted magnetic resonance imaging
Description
This is the dataset related to the paper "In-vivo probabilistic atlas of human thalamic nuclei based on diffusion weighted magnetic resonance imaging", E. Najdenovska*, Y. Aléman-Gómez*, G. Battistella, M. Descoteaux, P. Hagmann, S. Jacquemont, P. Maeder, J.-P. Thiran, E. Fornari and M. Bach Cuadra, Sci. Data. 5:180270 doi: 10.1038/sdata.2018.270 (2018). *Equally contributed authors.
We provide NifTI-1 files representing a digital atlas of seven thalamic subparts per hemisphere. More precisely, the files include the spatial probabilistic atlas maps for each thalamic subpart (Thalamus_Nuclei-HCP-4DSPAMs.nii.gz) and the maximum likelihood atlas (Thalamus_Nuclei-HCP-MaxProb.nii.gz) in MNI space. The region corresponding to each labeled thalamic part respectively is given in the look-up table Thalamic_Nuclei-ColorLUT.txt. The NIFTI files can be visualised with the main available tools such as tkmedit, freeview or 3D-Slicer.
We also provide a step by step pseudo code for creating the atlas.
Notes
Files
Description_HCPdata.txt
Files
(33.2 MB)
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Additional details
Related works
- Cites
- 10.1007/s00429-016-1336-4 (DOI)
- Is compiled by
- 10.5281/zenodo.123768 (DOI)
- Is part of
- 10.1038/sdata.2018.270 (DOI)
Funding
- Advanced high-field MR imaging and quantitative image analysis for segmentation of the thalamic nuclei 205321_157040
- Swiss National Science Foundation