Published August 23, 2018
| Version 1
Journal article
Open
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
Creators
- 1. The Pennsylvania State University
- 2. University of Pennsylvania
- 3. Washington University School of Medicine, St. Louis
- 4. University of North Carolina, Chapel Hill
- 5. Cleveland Clinic Foundation
Description
Here we introduce the 3D Genome Browser (http://3dgenome.org), which allows users to conveniently explore both their own and over 300 publicly available chromatin interaction data of different types. We design a new binary data format for Hi-C data that reduces the file size by at least a magnitude and allows users to visualize chromatin interactions over millions of base pairs within seconds. Our browser provides multiple methods linking distal cis-regulatory elements with their potential target genes. Users can seamlessly integrate thousands of other “omics” data to gain a comprehensive view of both regulatory landscape and 3D genome structure.
Files
3dgenome.zip
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Additional details
Related works
- Is supplement to
- 10.1101/112268 (DOI)
- https://github.com/yuelab/3dgenome (URL)