Data From: Oatk - a de novo assembly tool for complex plant organelle genomes

This reposity hosts the data for 195 plant organelle genome assemblies generated in the manuscript "Oatk: a de novo assembly tool for complex plant organelle genomes". The sequence data were produced by the Tree of Life programme at the Sanger Institute, mostly from the Darwin Tree of Life (DToL) project, including 24 monocots, 154 eudicots, 16 mosses and one liverwort. See SAMPLE_LIST file for descriptions of these species.

In each species subfolder, below files are included.

1. PLTD.fasta                   Plastome assembly file in FASTA format
2. PLTD.annot.bed          Plastome assembly annotation file in BED format
3. MITO.fasta                   Mitogenome assembly file in FASTA format
4. MITO.annot.bed          Mitogenome assembly annotation file in BED format
5. MBG.gfa                         Genome assembly file in GFA format generated with MBG
6. PMAT.gfa                       Genome assembly file in GFA format generated with OATK
7. OATK.gfa                       Genome assembly file in GFA format generated with PMAT (may not exist)