Published November 3, 2023
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Table 5 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes
Authors/Creators
- 1. State Key Laboratory of Freshwater Ecology and Biotechnology * and Key Laboratory of Aquaculture Disease Control * Ministry of Agriculture * Institute of Hydrobiology * Chinese Academy of Sciences * Wuhan 430072 * China
- 2. State Key Laboratory of Freshwater Ecology and Biotechnology * and Key Laboratory of Aquaculture Disease Control * Ministry of Agriculture * Institute of Hydrobiology * Chinese Academy of Sciences * Wuhan 430072 * China & College of Advanced Agricultural Sciences * University of Chinese Academy of Sciences * Beijing 100049 * China
- 3. Departamento de Microbiología y Parasitología * Facultad de Farmacia * Universidad Complutense de Madrid * Plaza Ramón y Cajal s / n * Madrid 28040 * Spain
Description
Table 5. Types of short tandem repeats (STRs) found in the sequences from opalinids.
| Type | Characteristics | Example | Sequence (position) |
|---|---|---|---|
| Direct | Head to tail | ||
| Perfect | All units equal | TAATAATAATAATAA | Opalina undulata MN 638758 (3423) |
| Imperfect | With substitutions and/or indels | AGTTT ATTTT AATTT | Zelleriella sp. MN638763 (1762) |
| Overlapped | STR includes bases | TTTA[T ATTAT]/ [TAT TAT] TAT | Protoopalina limnocharis MN 638759 (1493/1497) |
| Inverted | Head to head | ||
| Perfect | All units equal | TTTATAATATTT | Opalina triangulata MN 638762 (470) |
| Imperfect | With substitutions and/or indels | TTATTATTATTATTTTTTTTATTA(-) TATTATT | Opalina japonica MN 638764 (73) |
Notes
Published as part of Li, Ming, Hu, Guangran, Zhao, Weishan, Zou, Hong, Li, Wenxiang, Wu, Shangong, Wang, Guitang & Ponce-Gordo, Francisco, 2024, A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes, pp. 281 in Zoological Journal of the Linnean Society 201 (2) on page 281, DOI: 10.1093/zoolinnean/zlad150, http://zenodo.org/record/13220219
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- Is part of
- Journal article: 10.1093/zoolinnean/zlad150 (DOI)
- Journal article: urn:lsid:plazi.org:pub:FFF4FFFA75649466F0042747FFB36E6E (LSID)
- Journal article: http://zenodo.org/record/13220219 (URL)
- Journal article: http://publication.plazi.org/id/FFF4FFFA75649466F0042747FFB36E6E (URL)
- Journal article: http://zoobank.org/672E17B-149D-466C-9A6E-26C6DD65A7B6Corresponding (URL)