Published September 25, 2024
| Version v1
Dataset
Open
EGP Mitochondrial Genome Analysis on 1000 Genomes Project 698 Related Whole-Genome Sequencing Data
Authors/Creators
Description
Summary: This dataset consists of running EGP version 1.3 on whole-genome sequencing data from the 1000 Genomes Project 698 Related Dataset. The link to EGP is here https://github.com/tycheleturner/ElGenomaPequeno.
Author: Tychele N. Turner, Ph.D.
Short Writeup: EGP version 1.3 on 1000 Genomes Project 698 Related Dataset: Short-read WGS CRAM files were downloaded through the paths present in this file https://ftp-trace.ncbi.nlm.nih.gov/1000genomes/ftp/1000G_2504_high_coverage/additional_698_related/1000G_698_related_high_coverage.sequence.index. The results are shown below:
| Public Dataset | EGP Result File Type | MD5 |
| 1000 Genomes Project 698 Related | Mitochondrial Genome Fasta Files for MEGA | 322038d61b4da2e937b32410613c3532 |
| 1000 Genomes Project 698 Related | Mitochondrial Genome MitoMaster Result File | 36c782c12245100478903f7fa191a402 |
| 1000 Genomes Project 698 Related | Mitochondrial Genome Variant Tables | 68b2a51361ffae4e7ad9d420b8becd38 |
| 1000 Genomes Project 698 Related | Mitochondrial Genome Copy Number | 1e83c8ae132b0a7ef33b090757b29063 |
Please note: I have found that with Zenodo you must use "Download All" for the copy number table to properly open.
Files
Files
(759.5 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:36c782c12245100478903f7fa191a402
|
269.7 kB | Download |
|
md5:1e83c8ae132b0a7ef33b090757b29063
|
9.4 kB | Download |
|
md5:68b2a51361ffae4e7ad9d420b8becd38
|
290.7 kB | Download |
|
md5:322038d61b4da2e937b32410613c3532
|
189.6 kB | Download |
Additional details
Software
- Repository URL
- https://github.com/tycheleturner/ElGenomaPequeno
- Development Status
- Active