Published September 24, 2024
| Version v1
Dataset
Open
EGP Mitochondrial Genome Analysis on Human Genome Diversity Project Whole-Genome Sequencing Data
Authors/Creators
Description
Summary: This dataset consists of running EGP version 1.3 on whole-genome sequencing data from the HGDP. The link to EGP is here https://github.com/tycheleturner/ElGenomaPequeno.
Author: Tychele N. Turner, Ph.D.
Short Writeup: EGP version 1.3 on Simons Genome Diversity Project: Short-read WGS CRAM files were downloaded from the EMBL-EBI Public Data Globus Endpoint from the /1000g/ftp/data_collections directory. Post-download, the data was run through EGP version 1.3. The results are shown below:
| Public Dataset | EGP Result File Type | MD5 |
| Human Genome Diversity Project | Mitochondrial Genome Fasta Files for MEGA | 2b388c1fa446ecec70e33ea0471e06f8 |
| Human Genome Diversity Project | Mitochondrial Genome MitoMaster Result File | 50b80ed32b1ae542c8967cc31986dd19 |
| Human Genome Diversity Project | Mitochondrial Genome Variant Tables | 995f30b74c4bb094a674b1a994853246 |
| Human Genome Diversity Project | Mitochondrial Genome Copy Number | e79e61efab4c491fa2825b7d1853df58 |
Please note: I have found that with Zenodo you must use "Download All" for the copy number table to properly open.
Files
Files
(923.6 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:50b80ed32b1ae542c8967cc31986dd19
|
313.4 kB | Download |
|
md5:e79e61efab4c491fa2825b7d1853df58
|
14.1 kB | Download |
|
md5:2b388c1fa446ecec70e33ea0471e06f8
|
348.5 kB | Download |
|
md5:995f30b74c4bb094a674b1a994853246
|
247.5 kB | Download |
Additional details
Software
- Repository URL
- https://github.com/tycheleturner/ElGenomaPequeno
- Development Status
- Active