Published September 3, 2024
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Table 2 in The mitochondrial genome of the Yellowtail Snapper Ocyurus chrysurus (Bloch, 1791) (Perciformes: Lutjanidae)
Authors/Creators
- 1. School of Biology and Center of Excellence in Phylogeny of Living Organisms, College of Science, University of Tehran, Tehran, Iran;
- 2. National Systematics Laboratory, Office of Science and Technology, NOAA Fisheries, Washington, DC, USA; & Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA;
- 3. Department of Biological Sciences, Clemson University, Clemson, SC, USA; & Smithsonian Marine Station at Fort Pierce, Smithsonian Institution, Fort Pierce, FL, USA; & Departamento de Biología Marina, Facultad de Ciencias del Mar, Universidad Católica del Norte, Coquimbo, Chile
Description
Table 2. Selective pressure analysis in the protein-coding genes (PCGs) of Ocyurus chrysurus. Ka/Ks values were calculated using the G-MYN model.
| Genes | Ka | Ks | Ka/Ks | p values |
|---|---|---|---|---|
| atp8 | 0 | 0.447011 | 0 | NA |
| atp6 | 0.008628 | 0.643218 | 0.013415 | 1.92E-38 |
| cox1 | 0.001807 | 0.576714 | 0.003133 | 1.22E-94 |
| cox2 | 0 | 0.63547 | 0 | NA |
| cox3 | 0.00169 | 0.592519 | 0.002852 | NA |
| nad1 | 0.001421 | 0.887008 | 0.001602 | 2.80E-75 |
| nad2 | 0.01025 | 0.350753 | 0.010875 | 4.73E-34 |
| nad3 | 0.008549 | 0.896393 | 0.009537 | 2.55E-25 |
| nad4 | 0.008153 | 0.425769 | 0.01915 | 5.00E-57 |
| nad4l | 3.35E-12 | 0.910699 | 0.00 | 0 |
| nad5 | 0.010358 | 3.18101 | 0.010358 | 6.67E-150 |
| nad6 | 0.00607 | 0.370163 | 0.008141 | 8.27E-19 |
| cob | 0.825769 | 0.0012 | 0.001153 | 2.00E-30 |
Ka: number of nonsynonymous substitutions per nonsynonymous site; Ks: number of synonymous substitutions per synonymous site; Ka/Ks: ratio based on pairwise comparisons
Notes
Published as part of Fahimi, Neda, Bemis, Katherine E. & Baeza, J. Antonio, 2024, The mitochondrial genome of the Yellowtail Snapper Ocyurus chrysurus (Bloch, 1791) (Perciformes: Lutjanidae), pp. 1327 in Journal of Natural History 58 (33 - 36) on page 1327, DOI: 10.1080/00222933.2024.2388290, http://zenodo.org/record/13758413
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- Is part of
- Journal article: 10.1080/00222933.2024.2388290 (DOI)
- Journal article: urn:lsid:plazi.org:pub:FFE8FF82310D0A13FFA46B42D077F00F (LSID)
- Journal article: http://zenodo.org/record/13758413 (URL)
- Journal article: http://publication.plazi.org/id/FFE8FF82310D0A13FFA46B42D077F00F (URL)