Published September 19, 2024
| Version v1
Dataset
Open
Evolutionary dynamics and molecular epidemiology of H1N1 pandemic 2009 influenza A viruses across swine farms in Denmark
Authors/Creators
Description
Supporting files for manuscript "Evolutionary dynamics and molecular epidemiology of H1N1 pandemic 2009 influenza A viruses across swine farms in Denmark" include:
- isolates.xlsx (list of all IAV isolates in the sequencing dataset)
- alignment_* (segment sequence alignments)
- iqtree_* (IQ-TREE log files and contree outputs)
- treetime_* (selected TreeTime output)
- mutation_tree_* (phylogenetic molecular clock trees with annotated mutations)
Files
treetime_ha_root_to_tip_regression.pdf
Files
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