Datasets of protein models from plasmids containing conjugative Type 4 Secretion Systems

In the connected article, we have created a database of all modelled protein structures encoded on plasmids that contain conjugative type 4 secretion systems. In this deposition, you will find zip files of all structures modelled by AlphaFold, as well as the ones that were modelled using EMS fold. Further, there the csv file containing the DeepFRI output, as well as a fasta file containing the sequences of the plasmids.

The AlphaFold and ESM databases contain the structural models of the curated/triaged proteins, as described in the paper.