Dataset: Coral high molecular weight carbohydrates support opportunistic microbes in bacterioplankton from an algae-dominated reef
Authors/Creators
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Thobor, Bianca Maria
(Researcher)1
- Haas, Andreas F. (Supervisor)2
- Wild, Christian (Supervisor)1
- Nelson, Craig E. (Project member)3
- Wegley Kelly, Linda (Project member)4
- Hehemann, Jan-Hendrik (Project member)1, 5, 6
- Arts, Milou G. I. (Project member)2
- Boer, Meine (Project member)2
- Buck-Wiese, Hagen (Project member)1, 5, 6
- Nguyen, Nguyen P. (Project member)1, 5, 6
- et al. Show all 12 authors
-
Thobor, Bianca Maria
(Researcher)1
- Haas, Andreas F. (Supervisor)2
- Wild, Christian (Supervisor)1
- Nelson, Craig E. (Project member)3
- Wegley Kelly, Linda (Project member)4
- Hehemann, Jan-Hendrik (Project member)1, 5, 6
- Arts, Milou G. I. (Project member)2
- Boer, Meine (Project member)2
- Buck-Wiese, Hagen (Project member)1, 5, 6
- Nguyen, Nguyen P. (Project member)1, 5, 6
- Hellige, Inga (Project member)1, 5, 6
- Mueller, Benjamin (Supervisor)1, 3, 7, 8
-
1.
University of Bremen
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2.
Royal Netherlands Institute for Sea Research
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3.
University of Hawaiʻi at Mānoa
-
4.
Scripps Institution of Oceanography
-
5.
Max Planck Institute for Marine Microbiology
-
6.
Marum
-
7.
University of Amsterdam
-
8.
Caribbean Research and Management of Biodiversity Foundation
Description
This dataset contains raw data for figures 5 (genus-level microbial community compositions) and 6 (predicted metabolic functions, pathway types), R code for PERMANOVAs (Table 3), DESeq2 and random forest (rfpermute) analyses, and R code to generate figures 5, 6b, S5 & S6.
Overview of .txt files:
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Genus_16S_Counts.txt |
Counts data used for DESeq2 analysis (Fig. 5c). |
|
Genus_16S_relAbund.txt |
Relative abundance data used for Fig. 5a, b & d. |
|
MicFunPred_MetaCyc_types_all |
Predicted pathway abundance data for all pathway types used for DESeq2 (Fig. 6b), PERMANOVA (Table 3) and column clustering of Fig. 6b. |
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MicFunPred_MetaCyc_AA_types.txt |
Amino acids (Fig. 6b) |
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MicFunPred_MetaCyc_CH_types.txt |
Carbohydrates (Fig. 6b) |
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MicFunPred_MetaCyc_EM _types.txt |
Energy metabolism (Fig. 6b) |
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MicFunPred_MetaCyc_FAL _types.txt |
Fatty acids and lipids (Fig. 6b) |
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MicFunPred_MetaCyc_SM _types.txt |
Secondary metabolism (Fig. 6b) |
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MicFunPred_MetaCyc_OBiosyn _types.txt |
Other biosynthesis (Fig. S6) |
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MicFunPred_MetaCyc_ODeg _types.txt |
Other degradation (Fig. S6) |
Files
Genus_16S_relAbund.txt
Files
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