Published August 21, 2024
| Version v1
Dataset
Open
MSA-Limit
Authors/Creators
-
1.
Centre National de la Recherche Scientifique
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2.
Université de Lille
Description
Msa-limit is an analysis pipeline to test the efficiency of different multiple alignment software (MSA) on long reads. Using nanopore reads and a reference, it generates consensus sequences from the different MSA software to compare to the reference and see if the alignment is correct. (See the schematic in the doc file for more details)
Usable MSA software: muscle,mafft,poa,kalign,spoa,kalign3,clustalo,abpoa,tcoffee
Files
msa-limit.zip
Files
(137.6 MB)
| Name | Size | Download all |
|---|---|---|
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md5:144d5af174af783e3ac0059b2981f104
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137.6 MB | Preview Download |
Additional details
Related works
- Is documented by
- Publication: 10.1101/2023.10.03.560796 (DOI)
Software
- Repository URL
- https://gitlab.cristal.univ-lille.fr/crohmer/msa-limit
- Development Status
- Inactive