Published August 9, 2024 | Version v1
Dataset Open

Simulated data ground truth and results for CALDER

Authors/Creators

Description

Supporting data for CALDER 2019 publication

  • branchsim_results.ipynb: code used to load simulated results and generate figures used in paper
  • exome_sim3_groundtruth.pickle: ground truth for simulated datasets, see notebook for usage example
  • exome3_s.pickle: results from methods used for benchmarking on simulated data, see notebook for usage example
  • calder_util.py: supporting functions used in notebook
  • BsimExomeResults.zip: raw result files generated by CALDER, CALDER+pyclone, PhyloWGS, and CITUP on simulated datasets

Files

branchsim_results.ipynb

Files (2.1 GB)

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