De novo assembled nuclear, chloroplast and mitochondrial genomes show high intraspecific variation in the tropical rainforest species Symphonia globulifera

The raw reads and the chloroplast assembly are available from the European Nucleotide Archive (ENA) under project PRJEB62664. Here following files are made available: 1) repeat masked de novo genome assembly: Sglo_platanus2.masked.zip; 2) genome annotation: Sglo_augustus.hints_fix_ifs_.gtf; 3) nuclear coding sequences from the de novo genome assembly: Sglo_augustus.hints.codingseq.fa; 4) pairwise alignments of nuclear single-copy genes between two Symphonia globulifera specimens: Sglo_trimalSingleCopy.nex; 5) aligned chloroplast coding genes: Sglo_aligned_cpGenes.nex; 6) aligned mitochondrial coding genes: Sglo_aligned_mtGenes.nex; 7) functional annotation of the nuclear de novo genome assembly.