Loss of multi-level 3D genome organization during breast cancer progression - Third-party datasets

This entry contains the following datasets:

Datasets used by hic_breakfinder:

• inter_expect_1Mb.hg38.txt
• intra_expect_100kb.hg38.txt

FIles were originally downloaded from this URL.

Datasets used by HiNT:

• backgroundMatrices_hg38.zip
• refData_hg38.zip

Files were originally downloaded from the following URLs: link1, link2.

The above datasets are used by the data analysis workflows hosted at paulsengroup/2022-mcf10a-cancer-progression.
The results produced by running the workflows from the above repository were used as part of the following study:
Loss of multi-level 3D genome organization during breast cancer progression