Published August 1, 2024 | Version v1
Dataset Open

Alignments and ML trees of cassava brown streak virus and Ugandana cassava brown streak virus polyprotein nucleotide sequences

Authors/Creators

  • 1. Rutgers University New Brunswick
  • 2. ROR icon University of Puerto Rico at Humacao

Description

Alignments of full and nearly full polyprotein-length nucleotide sequences from GenBank for the two ipomoviruses that cause cassava brown streak disease, in fasta format.  Separate alignments for 67 cassava brown streak virus sequences and 81 Ugandan cassava brown streak virus sequences are provided, as well as a combined alignment of 148 sequences.  Alignments were created with MUSCLE and then modified by eye in AliView.

Also, two tree files (in nexus) format are supplied, resulting from a maximum likelihood analysis with IQTree on each of the two single-species datasets. Support for nodes with aLRT and 100 actual bootstrap replicates are provided (aLRT/bootstrap).

Files

Files (2.6 MB)

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md5:b0d750e5d541bea1d0baac1a46dc60a4
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Additional details

Funding

U.S. National Science Foundation
US-UK Collab: Resurrecting a role for roguing: Presymptomatic detection with multispectral imaging to quantify and control the transmission of cassava brown streak disease 2308503