Published July 11, 2018 | Version v1
Dataset Open

SRR606249 spiked with fungal and viral Illumina reads at 1x, 10X, and 100X

Authors/Creators

  • 1. University of Virginia

Description

SRR606249 spiked with fungal and viral Illumina reads at 1x, 10X, and 100X using the ART simulator.

See also: https://osf.io/dm938/ and https://dahak-metagenomics.github.io/

Fungal and viral genomes used for computational spike-ins.
Kingdom    Organism    Accession    Link
Fungus    Candida albicans SC5314    NC_032089.1    https://www.ncbi.nlm.nih.gov/genome/?term=Candida+albicans
Fungus    Cryptococcus neoformans var. grubii H99    NC_026745.1    https://www.ncbi.nlm.nih.gov/genome/?term=Cryptococcus+neoformans
Fungus    Aspergillus fumigatus Af293    NC_007194.1    https://www.ncbi.nlm.nih.gov/genome/?term=Aspergillus+fumigatus
Fungus    Histoplasma capsulatum NAm1    NW_001813913.1    https://www.ncbi.nlm.nih.gov/genome/?term=Histoplasma+capsulatum
Virus    Human immunodeficiency virus 1    NC_001802.1    https://www.ncbi.nlm.nih.gov/genome/10319
Virus    Influenza A virus (A/New York/392/2004(H3N2))    NC_007373.1    https://www.ncbi.nlm.nih.gov/genome/10290
Virus    Marburg virus - Musoke, Kenya, 1980    NC_001608.3    https://www.ncbi.nlm.nih.gov/genome/5314
Virus    Ebola virus - Mayinga, Zaire, 1976    NC_002549.1    https://www.ncbi.nlm.nih.gov/assembly/GCF_000848505.1/

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