Dataset Open Access

GEO Accession Lists by Platform

Rich Jones

Refine.bio survey list generator required CSV, tediously exported manually from GEO web interface.

Ex:

$ head accessions/Illumina\ HiSeq\ 2000.csv
"Experiment Accession","Experiment Title","Organism Name","Instrument","Submitter","Study Accession","Study Title","Sample Accession","Sample Title","Total Size, Mb","Total RUNs","Total Spots","Total Bases","Library Name","Library Strategy","Library Source","Library Selection"
"SRX4195895","4","Homo sapiens","Illumina HiSeq 2000","Kolling Institute, The University of Sydney","SRP150290","RET-altered microRNAs in MTC","SRS3406604","","370.5","1","15916120","795806000","4","miRNA-Seq","TRANSCRIPTOMIC","unspecified"
"SRX4195894","3","Homo sapiens","Illumina HiSeq 2000","Kolling Institute, The University of Sydney","SRP150290","RET-altered microRNAs in MTC","SRS3406603","","362.43","1","16021366","801068300","3","miRNA-Seq","TRANSCRIPTOMIC","unspecified"
"SRX4195893","6","Homo sapiens","Illumina HiSeq 2000","Kolling Institute, The University of Sydney","SRP150290","RET-altered microRNAs in MTC","SRS3406602","","407.58","1","18432342","921617100","6","miRNA-Seq","TRANSCRIPTOMIC","unspecified"
"SRX4195892","5","Homo sapiens","Illumina HiSeq 2000","Kolling Institute, The University of Sydney","SRP150290","RET-altered microRNAs in MTC","SRS3406605","","347.33","1","16162471","808123550","5","miRNA-Seq","TRANSCRIPTOMIC","unspecified"

 

Files (846.8 MB)
Name Size
gen_accession_list.py
md5:7ea708bf1a37548ad2ab0af236c4b404
4.5 kB Download
Illumina Genome Analyzer II.csv
md5:6836f9cba60463a857218462f7f4f2f9
33.1 MB Download
Illumina Genome Analyzer IIx.csv
md5:6659b42ca9ddd0b36bd34cf49d15fbd5
21.7 MB Download
Illumina Genome Analyzer.csv
md5:348732d303551f13c91880c79ee0ecb5
6.3 MB Download
Illumina HiScanSQ.csv
md5:04b25ddd75c60ec96a8a4c8c7a3dfb04
1.5 MB Download
Illumina HiSeq 1000.csv
md5:d8c365df50805cee254c451f02f62acb
5.7 MB Download
Illumina HiSeq 1500.csv
md5:0297884bc3737397587cbdd4306477a5
5.6 MB Download
Illumina HiSeq 2000.csv
md5:66001a5e6e0790f302b1c668e0cf2b46
441.6 MB Download
Illumina HiSeq 2500.csv
md5:06c7aca7867edeed4e1650ff7f71ef9d
244.9 MB Download
Illumina HiSeq 3000.csv
md5:16c35403363588f66b32d086ab45727c
4.2 MB Download
Illumina HiSeq 4000.csv
md5:73f7a42cc1ca854d8c5c08c32dbf55b0
22.4 MB Download
Ion Torrent Proton.csv
md5:36cd62164d71b2d0802dd3453f84815a
4.0 MB Download
Ion Torrent S5 XL.csv
md5:755e45f8749c8a42442db8933d429a9c
20.7 kB Download
Ion Torrent S5.csv
md5:4964720e8c2497d7d08ae3dae4890eb6
347.1 kB Download
NextSeq 500.csv
md5:415b75981139c163c90cee56a9e1f322
52.6 MB Download
NextSeq 550.csv
md5:800c0bc1dadaa9f25e91537c407d850c
2.9 MB Download
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