Published July 31, 2024
| Version v1
Dataset
Open
Rett Syndrome Omics Datasets integrated into RettDb
Contributors
Contact person:
Data curator (2):
Project member (2):
-
1.
University of Pisa
Description
This datasets collection is part of the web resource: RettDb, the Rett Syndrome Omics Database.
RettDb is fully described in this paper submitted to DATABASE: Cillàri, N., Neri, G., Pisanti, N., Milazzo, P., Borello, U. "RettDb: the Rett Syndrome Omics Database to navigate the Rett Syndrome genomic landscape"
The table below contains a brief description of the data
For a full description of the data, refer to the web resourse or this publication
| filenames | description | file-type |
| H3K4me3_wt_Chip_seq.bedgraph.gz | H3K4me3 ChipSeq | bedgraph |
| H3K4me3_wt_Chip_seq.bedgraph.gz.tbi | H3K4me3 ChipSeq Index | bedgraph index |
| H3K9me3_wt_Chip_seq.bedgraph.gz | H3K9me3 ChipSeq | bedgraph |
| H3K9me3_wt_Chip_seq.bedgraph.gz.tbi | H3K9me3 ChipSeq Index | bedgraph index |
| H3K27ac_wt_Chip_seq.bedgraph.gz | H3K27ac ChipSeq | bedgraph |
| H3K27ac_wt_Chip_seq.bedgraph.gz.tbi | H3K27ac ChipSeq Index | bedgraph index |
| H3K36me3_wt_Chip_seq.bedgraph.gz | H3K36me3 ChipSeq | bedgraph |
| H3K36me3_wt_Chip_seq.bedgraph.gz.tbi | H3K36me3 ChipSeq Index | bedgraph index |
| H4K20me3_wt_Chip_seq.bedgraph.gz | H4K20me3 ChipSeq | bedgraph |
| H4K20me3_wt_Chip_seq.bedgraph.gz.tbi | H4K20me3 ChipSeq Index | bedgraph index |
| Mecp2_wt_ChiP_seq_1.bedgraph.gz | Mecp2 ChipSeq | bedgraph |
| Mecp2_wt_ChiP_seq_1.bedgraph.gz.tbi | Mecp2 ChipSeq Index | bedgraph index |
| Mecp2_wt_ChiP_seq_2.bedgraph.gz | Mecp2 ChipSeq | bedgraph |
| Mecp2_wt_ChiP_seq_2.bedgraph.gz.tbi | Mecp2 ChipSeq Index | bedgraph index |
| Mecp2_wt_ChiP_seq_3.bw.gz.bw | Mecp2 ChipSeq | bigwig |
| Mecp2_RNA_seq_WT_vs_KO.bed.gz | Mecp2 RNASeq | bed |
| Mecp2_RNA_seq_WT_vs_KO.bed.gz.tbi | Mecp2 RNASeq Index | bed index |
| Mecp2_wt.hic | Mecp2 WT chromatin conformation data | hic |
| Mecp2_ko.hic | Mecp2 KO chromatin conformation data | hic |
| CpG_island_mm10.bed.gz | CpG island | bed |
| CpG_island_mm10.bed.gz.tbi | CpG island Index | bed index |
| FIMO_CISBP_TFBS_predictions.bed.gz | FIMO CISBP TFBS Predictions | bed |
| FIMO_CISBP_TFBS_predictions.bed.gz.tbi | FIMO CISBP TFBS Predictions Index | bed index |
| remap2022_CRMs.bb | Remap2022 Cis Regulatory Modules | bigbed |
| remap2022_non_redundant_peak.bb | Remap2022 Non Redundant Peaks | bigbed |
| hub.config.json | Tracks configuration file for WashU | json |
Files
README.txt
Files
(18.3 GB)
| Name | Size | |
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md5:611e001ae27730125ff7959c52514f17
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183.5 kB | Download |
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md5:8a8bc95451017bb74b2ce46fe5a00d57
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128.1 kB | Download |
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md5:3ea24fd1e55a84e2dc3da3dc6770cdaf
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4.8 GB | Download |
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md5:406dfe1b0411817f822b8010304cdac3
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1.2 MB | Download |
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md5:78436052e5beb3e4a213c6b596833075
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1.0 GB | Download |
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md5:05fd4043fdb63017c9467255cd96c1b6
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742.0 kB | Download |
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md5:9a65bb6f7fc33edb1ffed3d802bde13e
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1.2 GB | Download |
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md5:c821accfbb32deccb027825d9abc2951
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821.1 kB | Download |
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md5:b7887652edf09737506a80d0551dbdba
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1.4 GB | Download |
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md5:d2a3e388fc8e34b7dcd20fc90f18b5ef
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862.0 kB | Download |
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md5:393ad70205e44e1fb7d267b63be1f3f0
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698.8 MB | Download |
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md5:3bfa7fd57a33686260b7c34f898a3aa5
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626.5 kB | Download |
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md5:b95bcf70ecb12b655036a531ace36865
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762.9 MB | Download |
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md5:44937f27044b5fee1d5c31c520fe6ed5
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641.1 kB | Download |
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md5:91c9c6d9f9dde0b6a1f632e3fae4982b
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4.1 kB | Preview Download |
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md5:bb9ca68c22f6f509824a43d8a655bd11
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2.7 GB | Download |
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md5:658bc323a80723d37634e27acd02a668
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12.0 kB | Download |
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md5:ab91c0949c9b6458b2be3b64164d77a1
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14.0 kB | Download |
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md5:b6cc5bb4d21292ed86d28b48c2f9390c
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3.1 GB | Download |
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md5:f789d07e1c1ead9d9a94293a35548ebc
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557.0 MB | Download |
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md5:e748273b559bd0092491997466058b8a
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588.6 kB | Download |
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md5:5ea6680aa99c167b1707d6734d2aead5
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764.3 MB | Download |
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md5:b2087f161c94d8888973ac718de99554
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629.1 kB | Download |
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md5:b8fc777af7a6094ba5fcd8e6c7d08517
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287.1 MB | Download |
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md5:9c3443fee14434e8bf083bd620524e4b
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724 Bytes | Preview Download |
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md5:e0c54492e9fda88e0e79f1f448b87ba5
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59.5 MB | Download |
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md5:b7ed32db9309c442e89b6bda92535383
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1.0 GB | Download |
Additional details
Software
- Repository URL
- https://biomedinfo.di.unipi.it/rett-database/