Published August 2, 2024
| Version v2
Dataset
Open
Intra-host single-genome sequences of SARS-CoV-2 spike from people without HIV and people living with HIV
Authors/Creators
- Ko, Sung Hee (Researcher)
- Radecki, Pierce (Researcher)
- Belinky, Frida
- Bhiman, Jinal
- Meiring, Susan
- Kleynhans, Jackie
- Amoako, Daniel
- Guerra Canedo, Vanessa
- Lucas, Margaret
- Kekana, Dikeledi
- Martinson, Neil
- Limakatso, Lebina
- Everatt, Josie
- Tempia, Stefano
- Bylund, Tatsiana
- Rawi, Reda
- Kwong, Peter
- Wolter, Nicole
- von Gottberg, Anne
- Cohen, Cheryl
- Boritz, Eli
Description
Supporting data and code for the study "Rapid Intra-host Diversification and Evolution of SARS-CoV-2 in Advanced HIV Infection" (2024) by Ko & Radecki et al.
See the GitHub for demo of SGS and haplotype generation using example data from the study.
Raw sequencing data are deposited at PRJNA1055920.
READMEs are available within individual folders and releases.
Files
ko_radecki_et_al_2024_custom_scripts.zip
Additional details
Related works
- Is supplement to
- Software: 10.5281/zenodo.12774425 (DOI)
Software
- Repository URL
- https://github.com/niaid/UMI-pacbio-pipeline/releases/tag/SC2-HIV-demo
- Development Status
- Active