Metagenomic multiple extended locus typing (MetaMELT) analysis of mNGS data for fungal meningitis outbreak investigation

Contents of this directory:

Reference: Chiu, et al., 2025, Metagenomic Identification of Fusarium solani Strain as Cause of US Fungal Meningitis Outbreak Associated with Surgical Procedures in Mexico, 2023

1. metaMELT_code_testdata - metaMELT scripting code and test data for Fusarium solani, LCMV, and MTB runs.
2. metaMELT_paper_mNGS_reads - mNGS reads from patient samples
3. metaMELT_paper_Fusarium_genome_scaffolds - 18 assembled Fusarium solani draft genomes (consisting of a series of contigs / scaffolds)