Dataset Open Access

Assembly, annotation, and read counts for a simulated upwelling experiment

Lampe, Robert; Marchetti, Adrian

Data sets for:

Lampe RH, Cohen NR, Ellis KA, Bruland KW, Maldonado MT, Peterson TD, Till CP, Brzezinski MA, Bargu S, Thamatrakoln K, Kuzminov FI, Twining BS, and Marchetti A. (2018) Divergent gene expression among phytoplankton taxa in response to upwellingEnvironmental Microbiology 20, 3069-3082.

File descriptions:

  • contigs.fa - final assembly
  • counts_KO.tab - Raw counts for each contig with taxonomic annotation and KEGG Ortholog (KO) annotation.
  • counts_MO.tab - Raw counts for each contig with taxonomic annotation and KEGG Modules (MO) annotation.
  • counts_kegghit.tab - Raw counts for each contig with taxonomic annotation and a KEGG gene.

Counts column names correspond to the following treatments:

------------------------
Treatment  | Sample IDs
------------------------
T0         | Q45
T72-C      | Q46
T72-Fe     | Q50
T72-DFB    | Q53
T120-C     | Q55, Q56, Q57
T120-Fe    | Q58, Q59, Q60
T120-DFB   | Q61, Q62, Q63
T120-FeDFB | Q64, Q65, Q66

All counts files are tab delimited.

Files (351.3 MB)
Name Size
contigs.fa.gz
md5:96a0ee724cf1b3823dd3ef031f4fb33e
291.1 MB Download
counts_kegghit.tab.gz
md5:d626c7b5d96f045a4e289519f278d7b0
37.7 MB Download
counts_KO.tab.gz
md5:fbfe56d95b434a244c01513a1e844df8
12.7 MB Download
counts_MO.tab.gz
md5:0835c5dcf17aff15e4a464e69faa74dc
9.8 MB Download
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