Published May 31, 2018 | Version 1
Dataset Open

Assembly, annotation, and read counts for a simulated upwelling experiment

Creators

  • 1. University of North Carolina at Chapel Hill

Description

Data sets for:

Lampe RH, Cohen NR, Ellis KA, Bruland KW, Maldonado MT, Peterson TD, Till CP, Brzezinski MA, Bargu S, Thamatrakoln K, Kuzminov FI, Twining BS, and Marchetti A. (2018) Divergent gene expression among phytoplankton taxa in response to upwelling. Environmental Microbiology 20, 3069-3082.

File descriptions:

  • contigs.fa - final assembly
  • counts_KO.tab - Raw counts for each contig with taxonomic annotation and KEGG Ortholog (KO) annotation.
  • counts_MO.tab - Raw counts for each contig with taxonomic annotation and KEGG Modules (MO) annotation.
  • counts_kegghit.tab - Raw counts for each contig with taxonomic annotation and a KEGG gene.

Counts column names correspond to the following treatments:

------------------------
Treatment  | Sample IDs
------------------------
T0         | Q45
T72-C      | Q46
T72-Fe     | Q50
T72-DFB    | Q53
T120-C     | Q55, Q56, Q57
T120-Fe    | Q58, Q59, Q60
T120-DFB   | Q61, Q62, Q63
T120-FeDFB | Q64, Q65, Q66

All counts files are tab delimited.

Files

Files (351.3 MB)

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md5:96a0ee724cf1b3823dd3ef031f4fb33e
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