Published June 26, 2024 | Version v1

RNA velocity analysis of the integrated single cell atlas of neural crest lineages along the posterior developing zebrafish

  • 1. Universidade de Sao Paulo
  • 2. ROR icon Rice University

Description

H5AD files of an RNA velocity analysis of the integrated single cell atlas of neural crest lineages along the posterior developing zebrafish . For this, we have used Velocyto and scVelo. The notebooks to reproduce the scVelo part are here https://github.com/brunicardoso/e-signal-lab/blob/main/scvelo_sox10_integration48_68h__Uribe_using_original_seurat_metadata.ipynb .

This analysis was based on data published here https://elifesciences.org/articles/60005

Files

Files (3.2 GB)

Name Size
md5:03f1c727b457f16270998c1761b07861
3.2 GB Download

Additional details

Related works

Cites
Dataset: 10.7554/eLife.60005 (DOI)

Dates

Available
2024-03-20