Published January 25, 2017 | Version v3
Dataset Open

Processed read counts from macrophage RNA-seq and ATAC-seq experiments

  • 1. Wellcome Trust Sanger Institute

Description

RNA-seq files:

  1. RNA_count_matrix.txt.gz - raw read counts
  2. RNA_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package
  3. RNA_gene_metadata.txt.gz - information about the genes
  4. RNA_sample_metadata.txt.gz - information about the samples

ATAC-seq files:

  1. ATAC_count_matrix.txt.gz - raw read counts
  2. ATAC_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package
  3. ATAC_peak_metadata.txt.gz - peak coordinates and other metadata
  4. ATAC_sample_metadata.txt.gz - sample metadata
  5. ATAC_consensus_peaks.gff3.gz - GFF3 file containing the GRCh38 coordinates of the peaks

Files

ATAC_metadata_columns.txt

Files (211.4 MB)

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