Dataset Open Access
CryoEM Models and Associated Data Submitted to the 2015/2016 EMDataBank Model Challenge
Lawson, Catherine;
Kryshtafovych, Andriy;
Chiu, Wah;
Adams, Paul;
Brünger, Axel;
Kleywegt, Gerard;
Patwardhan, Ardan;
Read, Randy;
Schwede, Torsten;
Topf, Maya;
Afonine, Pavel;
Avaylon, Jaycob;
Baker, Matthew;
Braun, Tatjana;
Cao, Wei;
Chittori, Sagar;
Croll, Tristan;
DiMaio, Frank;
Frenz, Brandon;
Grudinin, Sergei;
Hoffmann, Alexandre;
Hryc, Corey;
Joseph, Agnel Praveen;
Kawabata, Takeshi;
Kihara, Daisuke;
Mao, Binchen;
Matthies, Doreen;
McGreevy, Ryan;
Nakamura, Haruki;
Nakamura, Shugo;
Nguyen, Lisa;
Schroeder, Gunnar;
Shekhar, Mrinal;
Shimizu, Kentaro;
Singharoy, Abhishek;
Sobolev, Oleg;
Tajkhorshid, Emad;
Teo, Ivan;
Terashi, Genki;
Terwilliger, Thomas;
Wang, Kevin;
Yu, Iris;
Zhou, Hong;
Sala, Raul
Files and metadata associated with the EMDataBank/Unified Data Resource for 3DEM 2015/2016 Models Challenge hosted at challenges.emdatabank.org are deposited.
All members of the Scientific Community--at all levels of experience--were invited to participate as Challengers, and/or as Assessors.
Eight recently determined target structures were selected for the challenge. All of the maps were archived in the EM Data Bank (EMDB; http://emdatabank.org).
In total 16 Challengers created 106 models and uploaded their results with associated details. In the zip files, each entry is represented in a folder containing the original deposition upload (deposited_EM.pdb), initial processing at RCSB/Rutgers (deposited_EM_edited.pdb, maxit.cif, maxit.cif.pdb) and final model version evaluated (model-compare.pdb) at UC Davis (http://model-compare.emdatabank.org).
This model challenge was one of two community-wide challenges sponsored by EMDataBank in 2015/2016 to critically evaluate 3DEM methods that are coming into use, with the ultimate goal of developing validation criteria associated with every 3DEM map and map-derived model.
| Name | Size | |
|---|---|---|
|
Model Challenge Web Contents Archive.pdf
md5:7bbeb8aef2c021850213fdc101aa4ce1 |
1.4 MB | Download |
|
model-challenge-workflow(1).xlsx
md5:9fe67a0638e20e8193598f1b832dc2ca |
75.0 kB | Download |
|
T0001_TMV_mapA.zip
md5:3374cdb7c6ede0eb468cd267684a1a21 |
285.9 MB | Download |
|
T0002_Proteasome_mapA.zip
md5:71035df675a4b1cacaa4736583419f67 |
258.0 MB | Download |
|
T0002_Proteasome_mapB.zip
md5:11beef3c78d0959d03562dee29d1da46 |
410.3 MB | Download |
|
T0003_GroEL_mapA.zip
md5:bea13a766b50c33385dc7874c3bd297c |
369.5 MB | Download |
|
T0004_TrpV1_mapA.zip
md5:50fe75c6dbc0b50b63e49a3e4fbe87e6 |
423.1 MB | Download |
|
T0005_BMV_mapA.zip
md5:e538d4cf518d1171f9fa044454fc4c01 |
1.0 GB | Download |
|
T0006_BetaGal_mapA.zip
md5:558c2f7649225695d604b04276338f9b |
556.1 MB | Download |
|
T0006_BetaGal_mapB.zip
md5:70afa8554e1ed6b666b6018cd870c4ad |
583.0 MB | Download |
|
T0007_GammaSec_mapA.zip
md5:4945266d01fc2be8b959aa4c03664e8c |
71.9 MB | Download |
|
T0007_GammaSec_mapB.zip
md5:d2af04d7a651b4699175d9e9ffbc8555 |
168.0 MB | Download |
|
T0008_Ribosome_mapA.zip
md5:98d333c9625bdb2452775f5e131cec1a |
1.3 GB | Download |
|
T0008_Ribosome_mapB.zip
md5:ce541e5b777f9281cf7662cb892fed33 |
765.4 MB | Download |
- Henderson et al (2012) Outcome of the first electron microscopy validation task force meeting. doi:10.1016/j.str.2011.12.014
- Lawson et al (2016) EMDataBank unified data resource for 3DEM. doi:10.1093/nar/gkv1126
- Publication date:
- January 24, 2018
- DOI:
-
- Keyword(s):
- cryo electron microscopy cryoEM validation challenge benchmark
- Subject(s):
- Related identifiers:
- Cites:
10.1093/nar/gkv1126, 10.1016/j.jsb.2016.02.008, http://model-compare.emdatabank.org - Documents:
http://challenges.emdatabank.org - Communities:
- License (for files):
- Creative Commons Attribution 4.0