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Published January 29, 2018 | Version 2.1.0
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Genome assemblies for "Versatile genome assembly evaluation with QUAST-LG"

Creators

  • 1. Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia

Description

De novo genome assemblies of

  1. Yeast_PB (S. cerevisiae, genome size: 12.1 Mb): Canu, FALCON, Flye, MaSuRCA (from Illumina pair-ends and PacBio SMRT)
  2. Yeast_NP (S. cerevisiae, genome size: 12.1 Mb): Canu, Flye, MaSuRCA (from Illumina pair-ends and Oxford Nanopores)
  3. Worm_PB (C. elegans,genome size: 100.3 Mb): Canu, FALCON, Flye, MaSuRCA (from Illumina pair-ends and PacBio SMRT)
  4. Fly_MP (D. melanogaster, genome size: 137.6 Mb): ABySS2, MaSuRCA, Meraculous, Platanus, SOAPdenovo2, SPAdes (from Illumina pair-ends and mate-pairs)
  5. Human_MP (H. sapiens, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and mate-pairs)
  6. Human_NP (H. sapiens, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and Oxford Nanopores)

Each pack is accompanied with the upper bound assembly created with QUAST-LG (for computing theoretical limits on assembly correctness and completeness for a particular genome and set of reads). For more information and other human datasets assemblies please visit http://cab.spbu.ru/software/quast-lg/ or write to quast.support@cab.spbu.ru.

Files

Files (2.3 GB)

Name Size Download all
md5:45b31b89364cafdf340007ab7b7fe990
283.5 MB Download
md5:027085eb699e84e1b3a8261db03dfd04
931.6 MB Download
md5:e9d666d774b255595ad55d37e518c78a
872.3 MB Download
md5:aac9190414276d36d9bf2351ed9c9b63
152.5 MB Download
md5:525a0db643d620ba7e87040ce38ca926
15.0 MB Download
md5:9da1651104527dc7e2a6de34722506fe
18.7 MB Download