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Published January 29, 2018 | Version 2.0.0
Dataset Open

Genome assemblies for "Versatile genome assembly evaluation with QUAST-LG"

Authors/Creators

  • 1. Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia

Description

Genome assemblies of

  1. Yeast_PB (S. cerevisiae, genome size: 12.1 Mb): Canu, FALCON, Flye, MaSuRCA (from Illumina pair-ends and PacBio SMRT)
  2. Yeast_NP (S. cerevisiae, genome size: 12.1 Mb): Canu, Flye, MaSuRCA (from Illumina pair-ends and Oxford Nanopores)
  3. Worm_PB (C. elegans,genome size: 100.3 Mb): Canu, FALCON, Flye, MaSuRCA (from Illumina pair-ends and PacBio SMRT)
  4. Fly_MP (D. melanogaster, genome size: 137.6 Mb): ABySS2, MaSuRCA, Meraculous, Platanus, SOAPdenovo2, SPAdes (from Illumina pair-ends and mate-pairs)

Each pack is accompanied with the upper bound assembly created with QUAST-LG (for computing theoretical limits on assembly correctness and completeness for a particular genome and set of reads). For more information please visit http://cab.spbu.ru/software/quast-lg/ or write to quast.support@cab.spbu.ru.

Files

Files (469.8 MB)

Name Size
md5:45b31b89364cafdf340007ab7b7fe990
283.5 MB Download
md5:aac9190414276d36d9bf2351ed9c9b63
152.5 MB Download
md5:525a0db643d620ba7e87040ce38ca926
15.0 MB Download
md5:9da1651104527dc7e2a6de34722506fe
18.7 MB Download