nipy/nipype: Nipype - v1.0.0

Gorgolewski, Krzysztof J.; Esteban, Oscar; Ziegler, Erik; Notter, Michael Philipp; Burns, Christopher; Ellis, David Gage; Johnson, Hans; Manhães-Savio, Alexandre; Hamalainen, Carlo; Jarecka, Dorota; Yvernault, Benjamin; Markiewicz, Christopher J.; Salo, Taylor; Waskom, Michael; Clark, Daniel; Wong, Jason; Loney, Fred; Madison, Cindee; Modat, Marc; Goncalves, Mathias; Dewey, Blake E; Clark, Michael G.; Dayan, Michael; Keshavan, Anisha; Clark, Dav; Pinsard, Basile; Gramfort, Alexandre; Berleant, Shoshana; Nielson, Dylan M.; Varoquaux, Gael; Cipollini, Ben; Nielson, Dylan M.; Markello, Ross; Rokem, Ariel; Wassermann , Demian; Halchenko, Yaroslav O.; Visconti di Oleggio Castello, Matteo; Kaczmarzyk, Jakub; Moloney, Brendan; Hanke, Michael; Horea, Christian; Bougacha, Salma; Gilles de Hollander; Mordom, David; Buchanan, Colin; Tungaraza, Rosalia; Mancini, Matteo; Pauli, Wolfgang M.; Iqbal, Shariq; Sikka, Sharad; Schwartz, Yannick; Malone, Ian B.; DuPre, Elizabeth; Frohlich, Caroline; Welch, David; Forbes, Jessica; Watanabe, Aimi; Cumba, Chad; Huntenburg, Julia M.; Eshaghi, Arman; Kastman, Erik; Ginsburg, Daniel; Schaefer, Alexander; Acland, Benjamin; Kent, James; Perez-Guevara, Martin; Gillman, Ashley; Bougacha, Salma; Forbes, Jessica; DuPre, Elizabeth; Nichols, B. Nolan; Giavasis, Steven; Jordan, Kesshi; Kleesiek, Jens; Erickson, Drew; Küttner, René; Haselgrove, Christian; Correa, Carlos; Ghayoor, Ali; Millman, Jarrod; Haehn, Daniel; Lampe, Leonie; Lai, Jeff; Zhou, Dale; Blair, Ross; Glatard, Tristan; Renfro, Mandy; Liu, Siqi; Kahn, Ari E.; Triplett, William; Jordan, Kesshi; Stadler, Jörg; Kong, Xiang-Zhen; Hallquist, Michael; McDermottroe, Conor; Chetverikov, Andrey; Salvatore, John; Mertz, Fred; Park, Anne; Poldrack, Russell; Jordan, Kesshi; Craddock, R. Cameron; Inati, Souheil; Hinds, Oliver; Cooper, Gavin; Perkins, L. Nathan; Tambini, Arielle; Marina, Ana; Mattfeld, Aaron; Noel, Maxime; Lukas Snoek; Matsubara, K; Cheung, Brian; Gerhard, Stephan; Rothmei, Simon; Urchs, Sebastian; Pannetier, Nicolas; Durnez, Joke; Geisler, Daniel; Floren, Andrew; Sharp, Paul; Mancini, Matteo; Weinstein, Alejandro; Broderick, William; Saase, Victor; Andberg, Sami Kristian; Harms, Robbert; Khanuja, Ranjeet; Schlamp, Kai; Arias, Jaime; Visconti di Oleggio Castello, Matteo; Papadopoulos Orfanos, Dimitri; Tarbert, Claire; De La Vega, Alejandro; Nickson, Thomas; Brett, Matthew; Dubois, Mathieu; Falkiewicz, Marcel; Podranski, Kornelius; Pellman, John; Linkersdörfer, Janosch; Varada, Jan; Schwabacher, Isaac; Flandin, Guillaume; Liem, Franz; Pérez-García, Fernando; Shachnev, Dmitry; McNamee, Daniel; Davison, Andrew; Ghosh, Satrajit

doi:10.5281/zenodo.1160610

Published January 25, 2018 | Version v1.0.0

Software Open

nipy/nipype: Nipype - v1.0.0

1. Department of Psychology, Stanford University
2. Independent
3. The Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland
4. The University of Iowa
5. University of Iowa
6. Klinikum rechts der Isar, TUM. ACPySS
7. MIT
8. Stanford University
9. Florida International University
10. Developer
11. Shattuck Lab, UCLA Brain Mapping Center
12. Department of Electrical and Computer Engineering, Johns Hopkins University
13. National Institutes of Health
14. Mayo Clinic, Neurology, Rochester, MN, USA
15. UC Berkeley - UCSF Graduate Program in Bioengineering
16. UC Berkeley
17. CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
18. National Institute of Mental Health
19. INRIA
20. UC San Diego
21. Montreal Neurological Institute and Hospital
22. The University of Washington eScience Institute
23. Athena EPI, Inria Sophia-Antipolis
24. Dartmouth College: Hanover, NH, United States
25. Dartmouth College
26. Otto-von-Guericke-University Magdeburg, Germany
27. Institute for Biomedical Engineering, ETH and University of Zurich
28. Molecular Imaging Research Center, CEA, France
29. Vrije Universiteit, Amsterdam
30. University College London
31. California Institute of Technology
32. Duke University
33. Nathan s Kline institute for psychiatric research
34. Child Mind Institute
35. Research Group Neuroanatomy and Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
36. Harvard University - Psychology
37. National University Singapore
38. Washington University in St Louis
39. Australian eHealth Research Centre, Commonwealth Scientific and Industrial Research Organisation; University of Queensland
40. SRI International
41. University of California, San Francisco
42. UniversityHospital Heidelberg, Germany
43. MPI CBS Leipzig, Germany
44. 1 McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University, Montréal, 3801 University Street, WB-208, H3A 2B4, Québec, Canada. 2 University of Lyon, CNRS, INSERM, CREATIS., Villeurbanne, 7, avenue Jean Capelle, 69621, France.
45. The University of Sydney
46. University of Pennsylvania
47. Leibniz Institute for Neurobiology
48. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
49. Donders Institute for Brain, Cognition and Behavior, Center for Cognitive Neuroimaging
50. University of Newcastle, Australia
51. Boston University
52. University of Amsterdam
53. Institute of Neuroinformatics, ETH/University of Zurich
54. Medical Imaging & Biomarkers, Bioclinica, Newark, CA, USA.
55. Department of Psychology, Stanford University; Parietal, INRIA
56. Technische Universität Dresden, Faculty of Medicine, Department of Child and Adolescent Psychiatry
57. The University of Texas at Austin
58. University of illinois urbana champaign
59. University of Helsinki
60. CEA
61. University of Texas at Austin
62. Child Mind Institute / Nathan Kline Institute
63. German Institute for International Educational Research
64. Stereotaxy Core, Brain & Spine Institute
65. University of Cambridge
66. MIT, HMS

1.0.0 (January 25, 2018) Full changelog

FIX: PBS plugin submissions (https://github.com/nipy/nipype/pull/2344)
FIX: Graph plugins submissions (https://github.com/nipy/nipype/pull/2359)
FIX: Logging error if % in interface command (https://github.com/nipy/nipype/pull/2364)
FIX: Robustly handled outputs of 3dFWHMx across different versions of AFNI (https://github.com/nipy/nipype/pull/2373)
FIX: Cluster threshold in randomise + change default prefix (https://github.com/nipy/nipype/pull/2369)
FIX: Errors parsing $DISPLAY (https://github.com/nipy/nipype/pull/2363)
FIX: MultiProc starting workers at dubious wd (https://github.com/nipy/nipype/pull/2368)
FIX: Explicitly collect MultiProc job IDs (https://github.com/nipy/nipype/pull/2378)
FIX: Correct Windows environment canonicalization (https://github.com/nipy/nipype/pull/2328)
FIX: Linked libraries (https://github.com/nipy/nipype/pull/2322)
REF+FIX: Move BIDSDataGrabber to interfaces.io + fix correct default behavior (https://github.com/nipy/nipype/pull/2336)
REF+MAINT: Simplify hashing (https://github.com/nipy/nipype/pull/2383)
MAINT: Cleanup Interfaces base (https://github.com/nipy/nipype/pull/2387)
MAINT: Cleanup EngineBase (https://github.com/nipy/nipype/pull/2376)
MAINT: Cleaning / simplify Node (https://github.com/nipy/nipype/pull/2325)
MAINT+ENH: Update and extend MRtrix3 interfaces (https://github.com/nipy/nipype/pull/2338)
ENH: Add AFNI interface for 3dConvertDset (https://github.com/nipy/nipype/pull/2337)
ENH: Allow specific interface command prefixes (https://github.com/nipy/nipype/pull/2379)
STY: Cleanup of PEP8 violations (https://github.com/nipy/nipype/pull/2358)
STY: Cleanup of trailing spaces and adding of missing newlines at end of files (https://github.com/nipy/nipype/pull/2355)
STY: Apply yapf to codebase (https://github.com/nipy/nipype/pull/2371)
DOC: Updated guide for contributing (https://github.com/nipy/nipype/pull/2393)

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nipy/nipype: Nipype - v1.0.0

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