Published June 7, 2024 | Version v1
Dataset Open

Demo Datasets for Non-light-sheet Imaging Modalities for PetaKit5D

Authors/Creators

  • 1. ROR icon University of California, Berkeley

Description

Demo dataset for PetaKit5D (https://github.com/abcucberkeley/PetaKit5D). 

There are four datasets for non-light-sheet modalities: 2-photon, confocal, oblique illumination "phase", and widefield. Some demos in PetaKit5D use this dataset to demonstrate the usage. Please refer to the readme.txt for the file structures, parameters, and other information.

Please cite our paper (https://doi.org/10.1101/2023.12.31.573734) if you use this dataset in your research:

Xiongtao Ruan, Matthew Mueller, Gaoxiang Liu, Frederik Görlitz, Tian-Ming Fu, Daniel E. Milkie, Joshua L. Lillvis, Alexander Kuhn, Chu Yi Aaron Herr, Wilmene Hercule, Marc Nienhaus, Alison N. Killilea, Eric Betzig, Srigokul Upadhyayula. Image processing tools for petabyte-scale light sheet microscopy data. bioRxiv 2023.12.31.573734; doi: https://doi.org/10.1101/2023.12.31.573734

Files

Files (2.3 GB)

Name Size
md5:da076c172b0e5f8314ace932711f226d
2.3 GB Download

Additional details

Identifiers

DOI
10.1101/2023.12.31.573734

Related works

Cites
Publication: 10.1101/2023.12.31.573734 (DOI)
Is supplement to
Software: https://github.com/abcucberkeley/PetaKit5D (URL)
Software: https://github.com/abcucberkeley/PetaKit5D-GUI (URL)
Software: https://github.com/abcucberkeley/Parallel_Fiji_Visualizer (URL)
Software: https://github.com/abcucberkeley/PyPetaKit5D (URL)

References

  • Xiongtao Ruan, Matthew Mueller, Gaoxiang Liu, Frederik Görlitz, Tian-Ming Fu, Daniel E. Milkie, Joshua L. Lillvis, Alexander Kuhn, Chu Yi Aaron Herr, Wilmene Hercule, Marc Nienhaus, Alison N. Killilea, Eric Betzig, Srigokul Upadhyayula. Image processing tools for petabyte-scale light sheet microscopy data. bioRxiv 2023.12.31.573734; doi: https://doi.org/10.1101/2023.12.31.573734