Published May 16, 2024
| Version v1
Journal article
Open
The InBIO Barcoding Initiative Database: DNA barcodes of Portuguese moths
Authors/Creators
- Ferreira, Sónia1
- Corley, Martin2
- Nunes, João3
- Rosete, Jorge4
- Vasconcelos, Sasha5
- Mata, Vanessa6
- Veríssimo, Joana7
- Silva, Teresa6
- Sousa, Pedro8
- Andrade, Rui9
- Grosso-Silva, José Manuel10
- Pinho, Catarina J.11
- Chaves, Cátia12
- Martins, Filipa MS6
- Pinto, Joana12
- Puppo, Pamela13
- Muñoz-Mérida, Antonio12
- Archer, John12
- Pauperio, Joana14
- Beja, Pedro15
- 1. CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairao, Universidade do Porto, 4485-661 Vairao, Vila do Conde, Portugal|EBM, Estação Biológica de Mértola, Praça Luís de Camões, Mértola, Portugal|BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairao, 4485-661 Vairao, Vila do Conde, Portugal
- 2. Pucketty Farm Cottage, Faringdon, Oxfordshire SN7 8JP, U.K, Oxfordshire, United Kingdom
- 3. Rua Eduardo Joaquim Reis Figueira, 1104 RC AR, 4440-647, Valongo, Portugal
- 4. Urbanização Lourisol, Rua Manuel Cerqueira Nobrega, Lote 16, 2. frente, P-3105-165 Louriçal, Pombal, Portugal
- 5. CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Instituto Superior de Agronomia, Universidade de Lisboa, Lisboa, Portugal|Department of Ecology, Swedish University of Agricultural Sciences, PO Box 7044, 750 07, Uppsala, Sweden
- 6. BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairao, 4485-661 Vairao, Vila do Conde, Portugal|CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairao, Universidade do Porto, 4485-661 Vairao, Vila do Conde, Portugal
- 7. CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairao, Universidade do Porto, 4485-661 Vairao, Vila do Conde, Portugal|Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, 4169-007, Porto, Portugal|BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairao, 4485-661 Vairao, Vila do Conde, Portugal
- 8. International Union for Conservation of Nature (IUCN), Species Survival Commission (SSC), Spider and Scorpion Specialist Group, Gland, Switzerland|CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairao, Universidade do Porto, 4485-661 Vairao, Vila do Conde, Portugal
- 9. Rua Calouste Gulbenkian 237 4H3, 4050-145, Porto, Portugal
- 10. Museu de História Natural e da Ciência da Universidade do Porto, Porto, Portugal
- 11. Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, 4169-007, Porto, Portugal|CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairao, Universidade do Porto, 4485-661 Vairao, Vila do Conde, Portugal|BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairao, 4485-661 Vairao, Vila do Conde, Portugal
- 12. CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairao, Universidade do Porto, 4485-661 Vairao, Vila do Conde, Portugal|BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairao, 4485-661 Vairao, Vila do Conde, Portugal
- 13. Marshall University, Department of Biological Sciences, Huntington, West Virginia, United States of America
- 14. European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom|CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto,, 4485–661 Vairão, Vila do Conde, Portugal
- 15. BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairao, 4485-661 Vairao, Vila do Conde, Portugal|CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairao, Universidade do Porto, 4485-661 Vairao, Vila do Conde, Portugal|CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Instituto Superior de Agronomia, Universidade de Lisboa, Lisboa, Portugal
Description
The InBIO Barcoding Initiative (IBI) Dataset - DS-IBILP08 contains records of 2350 specimens of moths (Lepidoptera species that do not belong to the superfamily Papilionoidea). All specimens have been morphologically identified to species or subspecies level and represent 1158 species in total. The species of this dataset correspond to about 42% of mainland Portuguese Lepidoptera species. All specimens were collected in mainland Portugal between 2001 and 2022. All DNA extracts and over 96% of the specimens are deposited in the IBI collection at CIBIO, Research Center in Biodiversity and Genetic Resources.
The authors enabled "The InBIO Barcoding Initiative Database: DNA barcodes of Portuguese moths" in order to release the majority of data of DNA barcodes of Portuguese moths within the InBIO Barcoding Initiative. This dataset increases the knowledge on the DNA barcodes of 1158 species from Portugal belonging to 51 families. There is an increase in DNA barcodes of 205% in Portuguese specimens publicly available. The dataset includes 61 new Barcode Index Numbers. All specimens have their DNA barcodes publicly accessible through BOLD online database and the distribution data can be accessed through the Global Biodiversity Information Facility (GBIF).
Files
BDJ_article_117169.pdf
Files
(1.9 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:252de25fd187fe923aff00a14a4cc034
|
1.9 MB | Preview Download |
System files
(163.3 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:cd2879ff5b42e3ec5e5bee996e42c951
|
163.3 kB | Download |
Linked records
Additional details
References
- Azevedo J, Antunes J, Machado A, Vasconcelos V, Leão P, Froufe E (2020) Monitoring of biofouling communities in a Portuguese port using a combined morphological and metabarcoding approach. Scientific Reports 10 (1). https://doi.org/10.1038/s41598-020-70307-4
- Boyer F, Mercier C, Bonin A, Le Bras Y, Taberlet P, Coissac E (2015) OBITOOLS: a UNIX-inspired software package for DNA metabarcoding. Molecular Ecology Resources 16 (1): 176‑182. https://doi.org/10.1111/1755-0998.12428
- Corley MFV (2015) Lepidoptera of Continental Portugal. A fully revised list. 1 Edition. Martin Corley, Faringdon, 288 pp. [In English]. [ISBN 9780993316005]
- Corley MFV (2017) Chrysoclista soniae (Lepidoptera, Elachistidae, Parametriotinae), a new species from Portugal. Entomologist's Gazette 68: 130‑134. [In English].
- Corley MFV, Ferreira S, Grundy D, Nunes J, Pires P, Rosete J (2018) New and interesting Portuguese Lepidoptera records from 2017 (Insecta: Lepidoptera). SHILAP Revista de lepidopterología 46 (184): 551‑576. https://doi.org/10.57065/shilap.747
- Corley MFV, Ferreira S, Mata V (2019a) Ypsolopha rhinolophi sp. nov. (Lepidoptera: Ypsolophidae), a new species from Portugal and France unveiled by bats. Zootaxa 4609 (3). https://doi.org/10.11646/zootaxa.4609.3.10
- Corley MFV, Nunes J, Rosete J, Ferreira S (2019b) New and interesting Portuguese Lepidoptera records from 2018 (Insecta: Lepidoptera). SHILAP Revista de lepidopterología 47 (188): 611‑630. https://doi.org/10.57065/shilap.490
- Corley MFV, Rosete J, Ferreira S (2020) Mondeguina, a new genus for Apatetris mediterranella Nel & Varenne, 2012, with description of a new species from Portugal (Lepidoptera, Gelechiidae). Nota Lepidopterologica 43: 151‑166. https://doi.org/10.3897/nl.43.50430
- Corley MFV, Afonso B (2021) Portuguese Lepidoptera records compiled by Martin Corley's database. 1.5. CIBIO (Research Center in Biodiversity and Genetic Resources. Release date: 2021-12-07. URL: https://doi.org/10.15468/ca4xt8
- Corley MFV, Nunes J, Rosete J, Teixeira J, Valadares A (2023) New and interesting Portuguese Lepidoptera records from 2022 (Insecta: Lepidoptera). SHILAP Revista de lepidopterología 51 (204): 609‑627. https://doi.org/10.57065/shilap.784
- da Silva L, Mata V, Lopes P, Lopes R, Beja P (2020) High‐resolution multi‐marker DNA metabarcoding reveals sexual dietary differentiation in a bird with minor dimorphism. Ecology and Evolution 10 (19): 10364‑10373. https://doi.org/10.1002/ece3.6687
- De Freina J, Monasterio León Y, Escobés Jiménez R, Vila R, Hinojosa JC (2021) Heterogynis Rambur, 1837 (Lepidoptera: Zygaenoidea, Heterogynidae) from Andalusia and the Algarve (Spain and Portugal): a taxonomic and faunistic review. Boletin de la Sociedad Entomológica Aragonesa 64: 75‑85. URL: http://zoobank.org/842fab2f-fa0c-4dba-a95b-2f0a94184739
- Dincă V, Dapporto L, Somervuo P, Vodă R, Cuvelier S, Gascoigne-Pees M, Huemer P, Mutanen M, Hebert PN, Vila R (2021) High resolution DNA barcode library for European butterflies reveals continental patterns of mitochondrial genetic diversity. Communications Biology 4 (1). https://doi.org/10.1038/s42003-021-01834-7
- Elbrecht V, Leese F (2017) Validation and development of COI metabarcoding primers for freshwater macroinvertebrate bioassessment. Frontiers in Environmental Science 5 https://doi.org/10.7287/peerj.preprints.2044v5
- Elbrecht V, Vamos EE, Meissner K, Aroviita J, Leese F (2017) Assessing strengths and weaknesses of DNA metabarcoding‐based macroinvertebrate identification for routine stream monitoring. Methods in Ecology and Evolution 8 (10): 1265‑1275. https://doi.org/10.1111/2041-210x.12789
- Elbrecht V, Braukmann TA, Ivanova N, Prosser SJ, Hajibabaei M, Wright M, Zakharov E, Hebert PN, Steinke D (2019) Validation of COI metabarcoding primers for terrestrial arthropods. PeerJ 7 https://doi.org/10.7717/peerj.7745
- Fais M, Bellisario B, Duarte S, Vieira PE, Sousa R, Canchaya C, Costa FO (2020) Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability. Regional Studies in Marine Science 38 https://doi.org/10.1016/j.rsma.2020.101341
- Ferreira S, Oosterbroek P, Starý J, Sousa P, Mata V, da Silva L, Paupério J, Beja P (2021) The InBIO Barcoding Initiative Database: DNA barcodes of Portuguese Diptera 02 - Limoniidae, Pediciidae and Tipulidae. Biodiversity Data Journal 9 https://doi.org/10.3897/bdj.9.e69841
- Gaedike R (2022) Two new species of the genus Epermenia Hübner, [1825] and some new distributional and taxonomic records (Lepidoptera: Epermeniidae). SHILAP Revista de lepidopterología 50 (200): 755‑761. https://doi.org/10.57065/shilap.269
- Hausmann A, Haszprunar G, Hebert PN (2011) DNA Barcoding the Geometrid Fauna of Bavaria (Lepidoptera): Successes, Surprises, and Questions. PLoS ONE 6 (2). https://doi.org/10.1371/journal.pone.0017134
- Hebert PN, Cywinska A, Ball S, deWaard J (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London. Series B: Biological Sciences 270 (1512): 313‑321. https://doi.org/10.1098/rspb.2002.2218
- Huang X, Madan A (1999) CAP3: A DNA Sequence Assembly Program. Genome Research 9 (9): 868‑877. https://doi.org/10.1101/gr.9.9.868
- Huemer P, Karsholt O (2018) Revision of the genus Megacraspedus Zeller, 1839, a challenging taxonomic tightrope of species delimitation (Lepidoptera, Gelechiidae). ZooKeys 800: 1‑278. https://doi.org/10.3897/zookeys.800.26292
- Huemer P, Karsholt O, Aarvik L, Berggren K, Bidzilya O, Junnilainen J, Landry J, Mutanen M, Nupponen K, Segerer A, Šumpich J, Wieser C, Wiesmair B, Hebert PN (2020) DNA barcode library for European Gelechiidae (Lepidoptera) suggests greatly underestimated species diversity. ZooKeys 921: 141‑157. https://doi.org/10.3897/zookeys.921.49199
- Martin CFV, Ferreira S (2019) A taxonomic revision of the Western Palaearctic genus Cacochroa Heinemann, 1870 (Lepidoptera, Depressariidae, Cryptolechiinae) with description of a new genus and a new species. Zootaxa 4683 (2). https://doi.org/10.11646/zootaxa.4683.2.2
- Mata V, Ferreira S, Campos R, da Silva L, Veríssimo J, Corley MV, Beja P (2020) Efficient assessment of nocturnal flying insect communities by combining automatic light traps and DNA metabarcoding. Environmental DNA 3 (2): 398‑408. https://doi.org/10.1002/edn3.125
- Mitchell A (2008) DNA barcoding demystified. Australian Journal of Entomology 47 (3): 169‑173. https://doi.org/10.1111/j.1440-6055.2008.00645.x
- Mortágua A, Vasselon V, Oliveira R, Elias C, Chardon C, Bouchez A, Rimet F, João Feio M, F.P. Almeida S (2019) Applicability of DNA metabarcoding approach in the bioassessment of Portuguese rivers using diatoms. Ecological Indicators 106 https://doi.org/10.1016/j.ecolind.2019.105470
- Müller B, Erlacher S, Hausmann A, Rajaei H, Sihvonen P, Skou P (2019) Ennominae II. In: Hausmann A, Sihvonen P, Rajaei H, Skou P (Eds) The geometrid moths of Europe. Vol. 6. Brill, Leiden, 906 pp.
- Nunes J, Cardoso H, Valadares A, Banza P, Tomás J, Valkenburg T (2023) Portuguese Moth Recording Scheme. 1.3. GBIF Portugal. URL: https://doi.org/10.15468/mbpxnd
- Oliveira D, Chaves C, Pinto J, Paupério J, Fonseca N, Beja P, Ferreira S (2021) DNA barcoding of Portuguese lacewings (Neuroptera) and snakeflies (Raphidioptera) (Insecta, Neuropterida). ZooKeys 1054: 67‑84. https://doi.org/10.3897/zookeys.1054.64608
- Ortiz A, Rubio R, Guerrero J, Garre M, Serrano J, Hebert P, Hausmann A (2017) Close congruence between Barcode Index Numbers (bins) and species boundaries in the Erebidae (Lepidoptera: Noctuoidea) of the Iberian Peninsula. Biodiversity Data Journal 5 https://doi.org/10.3897/bdj.5.e19840
- Ortiz A, Rubio R, de Freina J, Guerrero J, Garre M, Yela JL (2023) DNA barcoding and morphology reveal European and western Asian Arctia villica (Linnaeus, 1758) as a complex of species (Lepidoptera, Erebidae, Arctiinae). ZooKeys 1159: 69‑86. https://doi.org/10.3897/zookeys.1159.95225
- Pauperio J, Gonzalez LM, Martinez J, González M, Martins FM, Veríssimo J, Puppo P, Pinto J, Chaves C, Pinho C, Grosso-Silva JM, Quaglietta L, Silva TL, Sousa P, Alves P, Fonseca N, Beja P, Ferreira S (2023) The InBIO barcoding initiative database: DNA barcodes of Iberian Trichoptera, documenting biodiversity for freshwater biomonitoring in a Mediterranean hotspot. Biodiversity Data Journal 11 https://doi.org/10.3897/bdj.11.e97484
- Ratnasingham S, Hebert PN (2013) A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System. PLoS ONE 8 (7). https://doi.org/10.1371/journal.pone.0066213
- Rebelo H, Ferreira S, Amorim F, Horta P, Raposeira H, Santos H, Beja P, Mata V (2020) Hidden in our pockets: building of a DNA barcode library unveils the first record of Myotis alcathoe for Portugal. Biodiversity Data Journal 8 https://doi.org/10.3897/bdj.8.e54479
- Rognes T, Flouri T, Nichols B, Quince C, Mahé F (2016) VSEARCH: a versatile open source tool for metagenomics. PeerJ 4 https://doi.org/10.7717/peerj.2584
- Rosa P, Wood T, Silva TL, Veríssimo J, Mata V, Michez D, Beja P, Ferreira S (2023) The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of cuckoo wasps, with the description of new species from the Iberian Peninsula (Hymenoptera, Chrysididae). Biodiversity Data Journal 11 https://doi.org/10.3897/bdj.11.e98743
- Savolainen V, Cowan RS, Vogler AP, Roderick GK, Lane R (2005) Towards writing the encyclopaedia of life: an introduction to DNA barcoding. Philosophical Transactions of the Royal Society B: Biological Sciences 360 (1462): 1805‑1811. https://doi.org/10.1098/rstb.2005.1730
- Shokralla S, Porter T, Gibson J, Dobosz R, Janzen D, Hallwachs W, Golding GB, Hajibabaei M (2015) Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform. Scientific Reports 5 (1). https://doi.org/10.1038/srep09687
- Skou P, Stüning D, Sihvonen P (2017) Revision of the West-Mediterranean geometrid genus Ekboarmia, with description of a new species from Portugal (Lepidoptera, Geometridae, Ennominae). Nota Lepidopterologica 40 (1): 39‑63. https://doi.org/10.3897/nl.40.10440
- Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1 https://doi.org/10.3897/mbmg.1.14625
- Velarde‐Garcéz D, Mata V, Beja P, da Silva L (2023) DNA metabarcoding, diversity partitioning and null models reveal mechanisms of seasonal trophic specialization in a Mediterranean warbler. Molecular Ecology https://doi.org/10.1111/mec.17245
- Vella A, Mifsud CM, Magro D, Vella N (2022) DNA Barcoding of Lepidoptera Species from the Maltese Islands: New and Additional Records, with an Insight into Endemic Diversity. Diversity 14 (12). https://doi.org/10.3390/d14121090