Data from "Mitochondrial genomes of the European sardine (Sardina pilchardus) reveal Pliocene diversification, extensive gene flow and pervasive purifying selection"
Authors/Creators
-
1.
MARE - Centro de Ciências do Mar e do Ambiente
- 2. ARNET – Aquatic Research Network
- 3. Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa
- 4. cE3c – Centre for Ecology, Evolution and Environmental Changes
- 5. CHANGE – Global Change and Sustainability Institute
-
6.
Uppsala University
Description
INFORMATION ON THE FILES PROVIDED
File:
European_sardine_whole_mitogenome_139.fasta
Content:
Alignment of 139 European sardine whole mitogenome sequences
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File:
European_sardine_13_genes_139_IQTree.nex
Content:
Alignment of 13 mitochondrial genes from 139 European sardine samples
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File:
European_sardine_13_genes_139_Partitions.nex
Content:
Partition file for IQtree analysis of Sardina_13_genes_139_IQTree.nex
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File:
European_sardine_12_genes_63.fasta
Content:
Alignment of 12 mitochondrial genes from 60 European sardine and 3 Sardinops samples
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File:
BEAST_infile_calibration.xml
Content:
Input file for the BEAST analysis of European_sardine_12_genes_63.fasta
Files
BEAST_infile_calibration.xml
Files
(5.6 MB)
Additional details
Funding
- Fundação para a Ciência e Tecnologia
- Integrating genomics into fisheries: the case of Ibero-Atlantic sardine CEECIND/01528/2017
- Fundação para a Ciência e Tecnologia
- Genomic prediction of Oaks response to climate change 2021.08758.BD
- Fundação para a Ciência e Tecnologia
- Marine and Environmental Sciences Centre UIDB/04292/2020
- Fundação para a Ciência e Tecnologia
- Marine and Environmental Sciences Centre UIDP/04292/2020
- Fundação para a Ciência e Tecnologia
- Aquatic Research Network LA/P/0069/2020
- Fundação para a Ciência e Tecnologia
- Centre for Ecology, Evolution and Environmental Changes UIDB/00329/2020
- Fundação para a Ciência e Tecnologia
- Centre for Ecology, Evolution and Environmental Changes UIDP/00329/2020
- Fundação para a Ciência e Tecnologia
- CHANGE - Global Change and Sustainability Institute LA/P/0121/2020
- Fundação para a Ciência e Tecnologia
- Genomic prediction of Oaks response to climate change 2021.08758.BD