3D Cell Instance Segmentation Dataset of Master Thesis "Enhancing Cell Instance Segmentation in 3D Microscopy using Self-Supervised ViTs"

This is the 3D cell instance segmentation dataset of master thesis "Enhancing Cell Instance Segmentation in 3D Microscopy using Self-Supervised ViTs". The data is originally from the BBBC027 dataset comprising 30 sets of 3D image sets with high SNR level of quality. Because only the 4 to 100 slides of every 3D image set are annotated and the main difference between annotated and unannoated slides are the brightness, to avoiding misunderstanding by the algorithms, we removed the unannotated slides and separate every slide as individual images. We also converted the dataset to MSCOCO format for convenience.