Published April 21, 2024
| Version v1
Dataset
Open
Database S1 - ASVs significantly impacted by chemical stressor treatments
Authors/Creators
Description
In the study by Wasimuddin et al. 2024 (https://www.biorxiv.org/content/10.1101/2024.04.20.590402v1), we identified Amplicon Sequence Variants (ASVs) that differed significantly in mean relative abundance due to the chemical stressor treatments. We performed differential abundance analysis with DESeq2, i.e. between Ctr-As, Ctr-Bx, Ctr-Tb using negative binomial-based Wald tests (P≤0.05). The individual ASVs can be retrieved in the Database S1, which consists of a R object that can be easily imported in R and further used for downstream analyses as follows.
```
library(DESeq2)
DatabaseS1 <- readRDS("DatabaseS1.RDS")
names(DatabaseS1)
DatabaseS1[1]
```
Files
Files
(1.1 MB)
| Name | Size | |
|---|---|---|
|
md5:eee08b58862b6194362cbcf164115a57
|
1.1 MB | Download |
Additional details
Related works
- Is metadata for
- Preprint: https://www.biorxiv.org/content/10.1101/2024.04.20.590402v1 (URL)