Published September 19, 2024
| Version v2
Dataset
Open
Supporting data for: A comparative analysis of planarian genomes reveals regulatory conservation in the face of rapid structural divergence
Authors/Creators
-
1.
Max Planck Institute for Multidisciplinary Sciences
Description
This upload contains genome assemblies and annotation files for four planarian species.
Genome assemblies
The genome assemblies are deposited as FASTA files with the ending '.fa.gz'.
Genome annotations
The genome annotations are deposited as gff3 files and contain the 'ENCODE' keyword.
Integration into Wormbase are currently ongoing to provide userfriendly access.
Transposable element annotation
Transposable element annotation performed with the EDTA pipeline are deposited as GFF3 files with the file ending '.EDTA.TEanno.gff3.gz'.
Satellite DNA
Repetitive satellite regions annotated using RepeatExplorer and SRF are deposited as GFF3 files with the ending 'satDNA.gff3'.
Files
Files
(1.7 GB)
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md5:5bccdd161e9dad984bb9df1ec1f655b2
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426.8 MB | Download |
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md5:e0e1c1196e3fdc04d9cc1e90250d966f
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57.6 MB | Download |
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md5:18e636f86096d165ac9926ac70eed73a
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5.4 MB | Download |
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md5:bf7d64bf094f817316951acf6f7dbb1d
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789.8 kB | Download |
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md5:945eefdb3f5721008686690c679e4bb4
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235.1 MB | Download |
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md5:ea9e185bf8542522f87a1d1fabeef80a
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27.0 MB | Download |
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md5:bda446b842d38697029a0fab6bb490e7
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6.6 MB | Download |
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md5:0e3fb13f31fdd1bcccadba1b4bd9f7fe
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1.7 MB | Download |
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md5:37b80a6d023215a58efa261f87f435d2
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231.6 MB | Download |
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md5:41d7808d242aee98098377dcb0f626c3
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27.1 MB | Download |
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md5:b56b8761a8ae53b671ef501d08af704d
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6.5 MB | Download |
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md5:ee8c11670054d0d2ac8d1d57474e98f2
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1.5 MB | Download |
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md5:b1e229fe0a20da3402f7a1701cc42bda
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346.5 MB | Download |
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md5:ba62c20b792f57d1d647688734a56544
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46.2 MB | Download |
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md5:a6a43c3042e3bd6bb11c91b63c230553
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4.8 MB | Download |
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md5:15fee9ed12bd922fb31c5762142f441a
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772.1 kB | Download |
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md5:b0b74172c8a2008a357bf0981a35910c
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205.4 MB | Download |
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md5:f5aa5188235889a2cde417a71fa0005c
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23.3 MB | Download |
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md5:9865081e949952cc0d288cf2c15c564e
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5.1 MB | Download |
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md5:3ebea27d9c72904f1b37a44542209935
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1.3 MB | Download |
Additional details
Related works
- References
- Preprint: 10.1101/2023.12.22.572568 (DOI)