Published April 10, 2024 | Version v1

human-vaginal-v1-0 reference for LocalHGT

Authors/Creators

Description

Please download the file human-vaginal-v1-0.fasta.gz and unzip it by "gzip -d human-vaginal-v1-0.fasta.gz".  After that, pass the full path of the file "human-vaginal-v1-0.fasta" to LocalHGT by "localhgt bkp -r /path-to/human-vaginal-v1-0.fasta" or  "localhgt event -r /path-to/human-vaginal-v1-0.fasta". "human-vaginal-v1-0.fasta.fai" is the index file, you can download it or not. If you download it, you should put it in the same folder as human-vaginal-v1-0.fasta. If you don't download it, LocalHGT will generate it automatically. The file genomes-all_metadata.tsv records the taxonomy information of each genome. If you want to analyze HGTs in human oral microbiome, you can use this reference. Detailed instructions can be seen at LocalHGT.

Files

Files (151.3 MB)

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md5:a7be510ddf78fb06057ac267ac88234b
249.7 kB Download
md5:47e9fda781f6ef180cbe8e7cc9660cf2
1.0 MB Download
md5:8a2f67b6571ad4bb005cc4d0fe17e0a3
150.0 MB Download

Additional details

Related works

Is supplemented by
Dataset: https://github.com/deepomicslab/LocalHGT (URL)