human-vaginal-v1-0 reference for LocalHGT
Authors/Creators
Description
Please download the file human-vaginal-v1-0.fasta.gz and unzip it by "gzip -d human-vaginal-v1-0.fasta.gz". After that, pass the full path of the file "human-vaginal-v1-0.fasta" to LocalHGT by "localhgt bkp -r /path-to/human-vaginal-v1-0.fasta" or "localhgt event -r /path-to/human-vaginal-v1-0.fasta". "human-vaginal-v1-0.fasta.fai" is the index file, you can download it or not. If you download it, you should put it in the same folder as human-vaginal-v1-0.fasta. If you don't download it, LocalHGT will generate it automatically. The file genomes-all_metadata.tsv records the taxonomy information of each genome. If you want to analyze HGTs in human oral microbiome, you can use this reference. Detailed instructions can be seen at LocalHGT.
Files
Files
(151.3 MB)
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md5:8a2f67b6571ad4bb005cc4d0fe17e0a3
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Additional details
Related works
- Is supplemented by
- Dataset: https://github.com/deepomicslab/LocalHGT (URL)