Published April 10, 2024 | Version v1

TonB C-terminal domain simulation with amber99SB-ILDN (5 replicas)

Description

MD simulations of the folded C-terminal domain of TonB (residues 195-285) with amber99SB-ILDN force field. Five replicas from different starting structures from taken from RCSB PDB: 5LW8 (model 1, 5, 10, 15 and 20). Simulations were run wtih 40 mM NaCl at 303 K. The trajectory has a saving frequency of 10 ps. 

Files

Files (2.8 GB)

Name Size
md5:28899fadc8208f9321e4e42117bb076c
1.8 kB Download
md5:0bf858a246016b0f2cf4021a5875d4a6
2.5 MB Download
md5:bd898dc432261616c469bdc4ab262415
410.5 kB Download
md5:8ceee23743002d805baa1a553358f375
1.3 MB Download
md5:33ac2a5f61ee78aa3c33a2680f9af88d
2.5 MB Download
md5:0eddef817ba0d890644f6269b084899d
410.5 kB Download
md5:02ae331373a830462e2f08cb589e3348
1.3 MB Download
md5:ae26226ba846148854120292af620144
556.6 MB Download
md5:5154ca9ce634ed54c34fc001084e6c30
459.3 kB Download
md5:f0abb031a45dbc938d6f38ba5b7ed0b2
2.5 MB Download
md5:b11f89a2e3d7951c51f38f2ddf9dc483
410.5 kB Download
md5:706d0b079497955726282c3830bd7086
1.3 MB Download
md5:969a1ffcf3a39e2896920b645277fd29
556.7 MB Download
md5:e49be5028bf6f98dab83ab8c1486b927
459.4 kB Download
md5:1777d46fd927a90b2b3ddb908a8c7c12
556.6 MB Download
md5:7300cbe5875909d18d0f994cf1e1e7a6
459.4 kB Download
md5:9757b96a8c65ee8b3de79443e3eb2824
2.5 MB Download
md5:458a7574430061d6b94977e4f7ad8a83
410.5 kB Download
md5:24757d90b53a575882a25ffce4cdc7d9
1.3 MB Download
md5:502c95c7ef9e0d4b47dc1ff650207569
556.7 MB Download
md5:6dd4189dbd1b467df536cbe7bcfc351b
459.3 kB Download
md5:ad81b486fed96409121d79b0d91886e3
2.5 MB Download
md5:01365fbab195c0c0ed40084af9a35e9e
410.5 kB Download
md5:6463b7f1467c348ab6a3286b56e623f3
1.3 MB Download
md5:06b809dead5bd0e06c2183980f7f0d9b
556.6 MB Download
md5:646deb9e215eab6ac27754a286e529c3
459.3 kB Download
md5:4f18913667cbf865841d19c5ff1abe5c
2.5 MB Download
md5:38bb382e3c0e6a1ea26ac8fd3f319bb9
2.5 MB Download
md5:b4658c5513ef8168bb10ffd3ec5c7acf
2.5 MB Download
md5:168bd15d721c1472909884b5229bf8d6
2.5 MB Download
md5:87a976869428699a227e14974cfc404a
2.5 MB Download