Published April 9, 2024 | Version v1

MD simulation of POPC bilayer with OPLS4 force field. 7.5 w/l.

Authors/Creators

Description

MD simulation of POPC (1-palmitoyl-2-oleoyl-phosphatidylcholine) bilayer with OPLS4 force field. 7.5 w/l

Dataset contains original desmond trajectories (_trj), topologies (-out.cms), input files (.cfg, .msj, .cms), and other files

For the ease of the upload, trajectory files (_trj) are divided to 250ns pieces and tarred (named desmond_md_popc7.5wl_opls4_x-xns_trj.tar.gz)

Dataset also contains Gromacs converted files (.xtc, .gro and .top) 

System: POPC bilayer in water

Number of lipids: 200 (100/leaflet)

Number of waters: 1500

Simulation time: 500 ns

Simulation engine: Desmond 2022-2

Temperature: 300 K

Files

Files (22.1 GB)

Name Size
md5:6206847b89a9c698eb35c1217dad224b
771.2 kB Download
md5:58c74b5e6d4dcd0e7922fa6a075670f3
8.7 GB Download
md5:d4b254a9d40411730e9a13b77bea3f57
8.7 GB Download
md5:316938fd8c85b947ba6c69805eb2e344
10.0 MB Download
md5:5849d6ea73d3911a309df9b9108fcfd5
9.0 kB Download
md5:777124c1fc947b18879727402047ae7a
10.0 MB Download
md5:085ff8346c35fb89fc250f58650e055f
24.6 MB Download
md5:f3082fa87bf948e06e7b25345879b96a
8.2 MB Download
md5:40fec12dc14a987e69419e8c7d09f178
5.6 kB Download
md5:eea4071f7d1bdc6e8454836d4cc36044
2.2 MB Download
md5:c083805258ab37c5c45983129c6f099b
4.8 GB Download
md5:7041e7be4975748778f91cfbd809822b
15.2 kB Download