Published April 9, 2024
| Version v2
Dataset
Open
Data for Identifying Knot Types of Polymer Conformations by Machine Learning
Authors/Creators
Description
Training Data and Generalizability Testsets
For the publication PhysRevE.101.022502
@article{PhysRevE.101.022502,
title = {Identifying knot types of polymer conformations by machine learning},
author = {Vandans, Olafs and Yang, Kaiyuan and Wu, Zhongtao and Dai, Liang},
journal = {Phys. Rev. E},
volume = {101},
issue = {2},
pages = {022502},
numpages = {10},
year = {2020},
month = {Feb},
publisher = {American Physical Society},
doi = {10.1103/PhysRevE.101.022502},
url = {https://link.aps.org/doi/10.1103/PhysRevE.101.022502}
}
GitHub source code demo using this dataset:
🥨 https://github.com/CompSoftMatterBiophysics-CityU-HK/Identify-Knot-Types-by-ML-PRE2020
The above GitHub repo provide a docker, training code, best model with weights, and two showcases of generalizability.
Files
Additional details
Related works
- Is published in
- 10.1103/PhysRevE.101.022502 (DOI)
Software
- Repository URL
- https://github.com/CompSoftMatterBiophysics-CityU-HK/Identify-Knot-Types-by-ML-PRE2020
- Programming language
- Python
- Development Status
- Active
References
- Vandans, O., Yang, K., Wu, Z. and Dai, L., 2020. Identifying knot types of polymer conformations by machine learning. Physical Review E, 101(2), p.022502.