Published April 9, 2024 | Version v2

Data for Identifying Knot Types of Polymer Conformations by Machine Learning

  • 1. ROR icon City University of Hong Kong
  • 2. ROR icon National University of Singapore
  • 3. ROR icon Chinese University of Hong Kong

Description

Training Data and Generalizability Testsets

For the publication PhysRevE.101.022502

@article{PhysRevE.101.022502,
  title = {Identifying knot types of polymer conformations by machine learning},
  author = {Vandans, Olafs and Yang, Kaiyuan and Wu, Zhongtao and Dai, Liang},
  journal = {Phys. Rev. E},
  volume = {101},
  issue = {2},
  pages = {022502},
  numpages = {10},
  year = {2020},
  month = {Feb},
  publisher = {American Physical Society},
  doi = {10.1103/PhysRevE.101.022502},
  url = {https://link.aps.org/doi/10.1103/PhysRevE.101.022502}
}

GitHub source code demo using this dataset: 

🥨 https://github.com/CompSoftMatterBiophysics-CityU-HK/Identify-Knot-Types-by-ML-PRE2020

The above GitHub repo provide a docker, training code, best model with weights, and two showcases of generalizability.

Files

Files (1.6 GB)

Name Size
md5:cf81f0404324d0b98414136a4d17247f
791.6 MB Download
md5:e335de5a87ae6478d8ab0627ab6586ee
800.6 MB Download

Additional details

Related works

Is published in
10.1103/PhysRevE.101.022502 (DOI)

References

  • Vandans, O., Yang, K., Wu, Z. and Dai, L., 2020. Identifying knot types of polymer conformations by machine learning. Physical Review E, 101(2), p.022502.