Published March 31, 2024 | Version 1.0

Towards automatic derivation of geometry-based descriptors as surrogates for complex structural approaches in enzyme-substrate prediction

  • 1. ROR icon Adam Mickiewicz University in Poznań
  • 2. ROR icon International Institute of Molecular and Cell Biology

Description

Dataset produced for the Project PRELUDIUM19 2020/37/N/NZ2/00967 entitled: "Towards automatic derivation of geometry-based descriptors as surrogates for complex structural approaches in enzyme-substrate prediction"

The dataset counts with the three families of enzymes used: dehalogenase, aldehyde reductase and nitrilase.

For each enzyme, the docked structures, docked parameters and scripts to analyze them further are present. Moreover, the protocol that derives geometric descriptors from docked structures is also present.

This work was supported by the National Science Centre, Poland (grant no. 2020/37/N/NZ2/00967)

Files

Files (1.9 GB)

Name Size
md5:1fb322724296a5c24f8b4ad23ab57c41
130.0 MB Download
md5:e083e44f203d5ceede7179ac36dc4a19
256.1 MB Download
md5:6a4d7448804c9396c6a275a2e09190e0
1.5 GB Download

Additional details

Software

Repository URL
https://github.com/labbit-eu/substrate_prediction
Programming language
Python
Development Status
Concept