Data source for the ReMap REST API

Content

This Zenodo contains the ReMap BED files in bgzip format with the TABIX indexes for the 2022, 2020, 2018 and 2015 ReMap releases.

It contains all three data types (all peaks, non-redundant peaks and CRMs), except for 2015 (only all peaks, and non-redundant peaks available). 

Format 

The files formats for BGZIP BED files and TABIX indexes are as follow : 

• remap2018_all_macs2_hg38_v1_2.bed.gz
• remap2018_all_macs2_hg38_v1_2.bed.gz.tbi

1. remap2018 : ReMap release number (2015, 2018, 2020 or 2022)
2. all : data types (all= all peaks, nr= non-redundant peaks, crm=CisRegulatoryModules)
3. macs2 : peak caller used (always macs2)
4. hg38 : assembly version (hg19, hg38, mm10 etc..)
5. v1.2 : version patches

The versioning number (eg. v1.2, v1.0) which varies between ReMap releases have been normalized with symlinks pointing to *latest* files. e.g.

• remap2018_all_macs2_hg38_v1_2.bed.gz --> remap2018_all_macs2_hg38_latest.bed.gz

Folder architecture 

The architecture is as follow  : 

.

├── 2015

│   ├── hg19

│   └── hg38

├── 2018

│   ├── hg19

│   └── hg38

├── 2020

│   ├── TAIR10

│   ├── hg19

│   └── hg38

└── 2022

     ├── TAIR10

     ├── dm6

     ├── hg19

     ├── hg38

     ├── mm10

     └── mm39